View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_18 (Length: 246)
Name: NF3994_high_18
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9162137 - 9162375
Alignment:
| Q |
1 |
ttgaaaagtgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgatt |
100 |
Q |
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| T |
9162137 |
ttgaaaactgtaccaaaacctcctctgccgatgattaagctatcatcgtagtttttggtggctttctttagttcctcttctgtgaatatttgagctgatt |
9162236 |
T |
|
| Q |
101 |
gtgaagtatcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggta |
200 |
Q |
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| T |
9162237 |
gcgaagtgtcttctcttgttgatagctgttgtagcaatatagaacctccgtttttttgaaagaatttttgctttagtttgattaatttccttttttggta |
9162336 |
T |
|
| Q |
201 |
cgtcaagtatagaactgaaatcgccacaaatagaataat |
239 |
Q |
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| T |
9162337 |
cgtcaagtatagaactgaaatcgccacaaatagaataat |
9162375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 9219046 - 9219278
Alignment:
| Q |
1 |
ttgaaaagtgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgatt |
100 |
Q |
| |
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||||||| ||||||||||| |||| | |||||||||||| || |||||||||| |||||||||||| |||||| |||| |||||| |||||||||||| |
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| T |
9219046 |
ttgaaaactgtaccaaaacctcctctaccgatgattaagctttcgtcgtagtttttggtggctttcttaagttcctcttccgtgaatatttgagctgatt |
9219145 |
T |
|
| Q |
101 |
gtgaagtatcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggta |
200 |
Q |
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| T |
9219146 |
gcgaagtgtcttctcttgttgatagttgttgtagcaaaatagaaccaccattttgttgaaagaatttttgctttagtttgatgagtttccttttttggta |
9219245 |
T |
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| Q |
201 |
cgtcaagtatagaactgaaatcgccacaaatag |
233 |
Q |
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| T |
9219246 |
cgtcaagtatagagatgaaaccgccacaaatag |
9219278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 9170971 - 9171201
Alignment:
| Q |
9 |
tgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgattgtgaagta |
108 |
Q |
| |
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||||||||||| |||| || | |||||||||| ||||||||||||| |||||||||||| |||||| |||| |||||| ||||||||| ||| ||||| |
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| T |
9170971 |
tgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagctgcttgcgaagtg |
9171070 |
T |
|
| Q |
109 |
tcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggtacgtcaagt |
208 |
Q |
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| T |
9171071 |
tcttcacttgtagacagttgttgtagcaaaatggaaccaccatttttttgaaagaatttttgcttgagcttgatgagtttccttttttggtatgtcaagt |
9171170 |
T |
|
| Q |
209 |
atagaactgaaatcgccacaaatagaataat |
239 |
Q |
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||||| |||||| |||||||||||||||| |
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| T |
9171171 |
atagagaagaaatcaccacaaatagaataat |
9171201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 9178953 - 9179183
Alignment:
| Q |
9 |
tgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgattgtgaagta |
108 |
Q |
| |
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||||||||||| |||| || | |||||||||| ||||||||||||| |||||||||||| |||||| |||| |||||| ||||||||| ||| ||||| |
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| T |
9178953 |
tgtaccaaaacctcctctgccaatgattaagctttcatcgtagtttttggtggctttcttaagttcctcttctgtgaatatttgagctgcttgcgaagtg |
9179052 |
T |
|
| Q |
109 |
tcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggtacgtcaagt |
208 |
Q |
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||||| ||||| || || ||||||||||| || ||||| || || |||||||||||||||||||| || ||||| | ||||||||||||||| ||||||| |
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| T |
9179053 |
tcttcacttgtagacagttgttgtagcaaaatggaaccaccatttttttgaaagaatttttgcttgagcttgatgagtttccttttttggtatgtcaagt |
9179152 |
T |
|
| Q |
209 |
atagaactgaaatcgccacaaatagaataat |
239 |
Q |
| |
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||||| |||||| |||||||||||||||| |
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| T |
9179153 |
atagagaagaaatcaccacaaatagaataat |
9179183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9156225 - 9156437
Alignment:
| Q |
1 |
ttgaaaagtgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgatt |
100 |
Q |
| |
|
||||||| ||||||||||| |||| || | ||||||||| ||||||||||||| |||||||||||| |||||| |||| |||||| ||| |||||||| |
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| T |
9156225 |
ttgaaaactgtaccaaaacctcctctgccaatgattaagttttcatcgtagtttttggtggctttcttaagttcctcttcagtgaatatttcagctgatt |
9156324 |
T |
|
| Q |
101 |
gtgaagtatcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggta |
200 |
Q |
| |
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| || || ||||||||||| || || ||||||||||| || ||||| || || | ||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
9156325 |
gcgaggtgtcttctcttgtagatagttgttgtagcaaaatggaaccaccattttgttgaaagaatttttgctttagtttgatgaatttccttttttggaa |
9156424 |
T |
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| Q |
201 |
cgtcaagtataga |
213 |
Q |
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|||||||||||| |
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| T |
9156425 |
tgtcaagtataga |
9156437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 9200538 - 9200764
Alignment:
| Q |
9 |
tgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgattgtgaagta |
108 |
Q |
| |
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||||||||||| |||| | |||||||||||| || ||||| |||| |||||||||||| |||||| |||| |||||| |||| |||| ||| ||||| |
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| T |
9200538 |
tgtaccaaaacctcctctaccgatgattaagctttcgtcgtattttttggtggctttcttaagttcctcttctgtgaatatttgtgctgcttgagaagtg |
9200637 |
T |
|
| Q |
109 |
tcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggtacgtcaagt |
208 |
Q |
| |
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||||||||||| || || || |||| ||| || ||||| || || |||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| |
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| T |
9200638 |
tcttctcttgtagatagttgctgtaccaaaatggaaccaccatttttttgaaagaatttttgcttgagtttgatgagtttccttttttggtatgtcaagt |
9200737 |
T |
|
| Q |
209 |
atagaactgaaatcgccacaaatagaa |
235 |
Q |
| |
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||||| |||||||| |||||||||| |
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| T |
9200738 |
atagagaagaaatcgcgacaaatagaa |
9200764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9118315 - 9118078
Alignment:
| Q |
1 |
ttgaaaagtgtaccaaaacttcctatgacgatgattaagccatcatcgtagttttaggtggctttctttagttccgcttcggtgaatttttgagctgatt |
100 |
Q |
| |
|
||||||| |||||| |||| |||| | | |||||||||| || |||||| | | ||| ||||| || |||||| ||| |||||| | |||||||||| |
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| T |
9118315 |
ttgaaaattgtaccgaaacctcctcttccaatgattaagctttcgtcgtagctgttggtagcttttttaagttccttttctgtgaatatctgagctgatt |
9118216 |
T |
|
| Q |
101 |
gtgaagtatcttctcttgttgagagctgttgtagcaatatagaacctccgttattttgaaagaatttttgctttagtttgattaatttccttttttggta |
200 |
Q |
| |
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| || || ||||||||||| |||| | ||||||||| || |||| || || | ||||||||||||||| ||||||||||| | ||| ||||||||||| |
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| T |
9118215 |
gagacgtgtcttctcttgtaaagagtttttgtagcaaaatgaaaccaccattttgttgaaagaatttttgttttagtttgatgagttttcttttttggta |
9118116 |
T |
|
| Q |
201 |
cgtcaagtatagaactgaaatcgccacaaatagaataa |
238 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||| |
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|
| T |
9118115 |
tatcaagtatagagatgaaatccccacaaatagaataa |
9118078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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