View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_19 (Length: 242)
Name: NF3994_high_19
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 5674368 - 5674581
Alignment:
| Q |
16 |
gagagtacatcaaatgttgaaagtttgattttcggtaaactttcgtttatcaattcctttcgtccaagttttctctgctttctagtgtgggatccgaagg |
115 |
Q |
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| T |
5674368 |
gagagtacatcaaatgttgaaagtttgattttcggtaaacttt-gtttatcaattcctttcgtccaagttttctctgctttctagtgtgggatccgaagg |
5674466 |
T |
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| Q |
116 |
aaggaaattgttgggaaggctttgggaaagtctcacgccatcaaaagttattgtcttcacgtaaatgtttcgccatcgttgccaactagagaaaatttgg |
215 |
Q |
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| T |
5674467 |
aaggaaattgttgggaaggctttgggaaagtctcacgccatcaaaagttattgtcttcatgtaaatgtttcgccatcgttgccaactagagaaaatttgg |
5674566 |
T |
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| Q |
216 |
tgtggaaaagagtat |
230 |
Q |
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| T |
5674567 |
tgtggaaaagagtat |
5674581 |
T |
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