View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3994_high_20 (Length: 242)

Name: NF3994_high_20
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3994_high_20
NF3994_high_20
[»] chr2 (1 HSPs)
chr2 (12-228)||(36162743-36162959)
[»] chr8 (9 HSPs)
chr8 (47-228)||(30078866-30079047)
chr8 (28-228)||(26034744-26034944)
chr8 (23-228)||(25895438-25895643)
chr8 (32-228)||(26038620-26038816)
chr8 (31-228)||(20507400-20507597)
chr8 (31-228)||(25030719-25030916)
chr8 (28-228)||(25924198-25924398)
chr8 (151-228)||(4409993-4410070)
chr8 (151-203)||(24951709-24951761)
[»] chr3 (4 HSPs)
chr3 (35-228)||(45795132-45795325)
chr3 (35-228)||(45793863-45794056)
chr3 (83-228)||(45795389-45795537)
chr3 (85-228)||(45794120-45794266)
[»] chr4 (2 HSPs)
chr4 (31-228)||(17773087-17773285)
chr4 (152-228)||(46839732-46839808)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 36162959 - 36162743
Alignment:
Q  12 aaaggacagcaagaggtttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagag 111  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36162959 aaaggacagcaagaggcttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagag 36162860  T
Q  112 agcagtccttgtcttttttgtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctc 211  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36162859 agcagtccttgtcctttttgtccattgaaatatcaacaaaaataagcattgtcttcaaaaaaagtccgttccgcaaaatatattcagcaaatgtcagctc 36162760  T
Q  212 atcttcaagtccttgat 228  Q
    |||||||||||||||||    
T  36162759 atcttcaagtccttgat 36162743  T

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Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 30079047 - 30078866
Alignment:
Q  47 agctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttttttgtccattgaaatatca 146  Q
    |||||||||||||| ||||| |||  | | ||||||| |||||||||||||||||||||||||||| || | ||||| | ||||||||||||||||||||    
T  30079047 agctgggtcaaatttaagttcacatgtaacagagccctttggtatgtcagttaatcttttgagagaacaatacttgtttgttttgtccattgaaatatca 30078948  T
Q  147 acaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||    
T  30078947 acaaaaataagcattgtcttcaatacaagtccgttccgcaaaatatagtcagcaaatgccagctcatcttccaatccttgat 30078866  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 26034944 - 26034744
Alignment:
Q  28 tttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttt 127  Q
    |||||||||| |  ||||||| |||||| || | |||||| ||  ||| ||||||| ||| ||| |  ||||||||||||||||| || ||||||||  |    
T  26034944 tttcaccttatgaggatacagttgggtcgaacttaagttggcaagtgacagagccctttgatatatttgttaatcttttgagagaacattccttgtccgt 26034845  T
Q  128 tttgtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttga 227  Q
    |||||||||| || ||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  26034844 tttgtccattaaactatcaacaaaaattaacattgtcctcaaaacaagtccgttctgcaaaatatattcagcaaatgtcagctcatattcaagtccttga 26034745  T
Q  228 t 228  Q
    |    
T  26034744 t 26034744  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 25895438 - 25895643
Alignment:
Q  23 agaggtttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttg 122  Q
    |||| ||||||||||| |||| || ||||||||||||| |||||| ||  ||| ||||||||||||||| |||||||||||||||| |||    | |||     
T  25895438 agagttttcaccttaaagagagacggctgggtcaaatttaagttggcaggtgacagagccccttggtatatcagttaatcttttgacagaaagatactta 25895537  T
Q  123 tcttttttgtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtc 222  Q
    |   || ||| ||||||| |||||||||||||||||||||| | ||||||||||||||||| || || ||||||||||||||| ||||| ||||||| ||    
T  25895538 ttcgttgtgtgcattgaagtatcaacaaaaataagcattgtttgcaaaacaagtccgttcctcagaagatattcagcaaatgtaagctcgtcttcaaatc 25895637  T
Q  223 cttgat 228  Q
    ||||||    
T  25895638 cttgat 25895643  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 26038816 - 26038620
Alignment:
Q  32 accttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttttttg 131  Q
    ||||||||||||  || |||  ||||| | |||||| ||  ||| ||||||||||||||| |  ||||||||||||| ||| | || ||||| | || ||    
T  26038816 accttaaggagacccatctgcatcaaagttaagttggcaagtgacagagccccttggtatatttgttaatcttttgatagaacggtacttgtttgttatg 26038717  T
Q  132 tccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||||||| ||||||| ||||||||    
T  26038716 tccaatgaaatgtcaacaaaaataagcattgtctccaaaacaagtccgttacgcaaaataaattcggcaaatgtcagctcgtcttcaaatccttgat 26038620  T

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Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 20507597 - 20507400
Alignment:
Q  31 caccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtctttttt 130  Q
    ||||||| | ||| ||||||| |||||||| |||||| ||  ||| ||||||||||||||| |||||||| ||||||| ||| |||| ||||| |  |      
T  20507597 caccttatgaagacacagctgagtcaaatttaagttggcatgtgacagagccccttggtatatcagttaagcttttgatagaacagttcttgtttgatag 20507498  T
Q  131 gtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    |||||||||| |||| | |||||| |||||||| |  ||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  20507497 gtccattgaagtatcgaaaaaaatgagcattgtgtgtaaaacaattccgttacgcaaaatatattcagcaaatgccagctcatcttcaaatccttgat 20507400  T

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Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 25030719 - 25030916
Alignment:
Q  31 caccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtctttttt 130  Q
    ||||||| ||||| |||||||  ||||||| |||||| ||  ||| ||||||||||||||| |||||||||||| ||| ||| |||| |||||   ||      
T  25030719 caccttatggagacacagctgaatcaaatttaagttggcatgtgacagagccccttggtatatcagttaatcttctgatagaacagttcttgttagttag 25030818  T
Q  131 gtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    |||||||||  |||| | |||||  |||||||| |  ||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||    
T  25030819 gtccattgatgtatcgaaaaaaacgagcattgtgtgtaaaacaagtccgttctgcaaaacatattcagcaaatgccagctcatcttcaaatccttgat 25030916  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 25924398 - 25924198
Alignment:
Q  28 tttcaccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttt 127  Q
    |||||||||||| |||||| ||||||||||||  ||  || ||| ||  ||||||||| || || |||  ||||||||||| ||| || | ||| | | |    
T  25924398 tttcaccttaagaagatacggctgggtcaaatctaatctggcacttggcagagcccctgggaatttcaagtaatcttttgacagaacaatacttatttgt 25924299  T
Q  128 tttgtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttga 227  Q
    |  ||||||||||  ||| ||| |||||||||| | || |||||||||||| ||||||||||||||||||||||||| || ||||||||||  |||||||    
T  25924298 tgggtccattgaagcatcgacataaataagcatcgcctccaaaacaagtccattccgcaaaatatattcagcaaatgccaactcatcttcacatccttga 25924199  T
Q  228 t 228  Q
    |    
T  25924198 t 25924198  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 4410070 - 4409993
Alignment:
Q  151 aaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    |||||| ||||||||||||| ||| ||| || ||||||||||| ||| |||||  || |||||||  |||||||||||    
T  4410070 aaataaccattgtcttcaaagcaaatccatttcgcaaaatatactcaacaaataacaactcatctggaagtccttgat 4409993  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 24951709 - 24951761
Alignment:
Q  151 aaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaat 203  Q
    |||||||||||||||||||||||||||| | | |||||| |||  ||||||||    
T  24951709 aaataagcattgtcttcaaaacaagtccatactgcaaaacataaccagcaaat 24951761  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 45795325 - 45795132
Alignment:
Q  35 ttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttttttgtcc 134  Q
    ||||| ||||||| | |||| ||||| |||||||||| |||||||||||||| | |||| || ||||||||  ||||| || || |||||  ||||||||    
T  45795325 ttaagaagatacatcagggttaaatttaagttgacacttgatagagccccttagcatgttagataatctttgaagagaacaatcattgtccattttgtcc 45795226  T
Q  135 attgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    ||||||||||||||||||||||||||||||||| ||||  |   ||||| ||||||||||||||||||| |||  ||||||||||||| |||||    
T  45795225 attgaaatatcaacaaaaataagcattgtcttccaaacttgcatgttccacaaaatatattcagcaaatatcatttcatcttcaagtctttgat 45795132  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 45794056 - 45793863
Alignment:
Q  35 ttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtcttttttgtcc 134  Q
    ||||| ||||||| |  ||| ||||| |||||||||| ||||||||||||||   |||| || ||||||||| | ||| ||||| ||| |  ||||||||    
T  45794056 ttaagaagatacatcatggttaaatttaagttgacacttgatagagccccttatcatgttagataatcttttaaaagaacagtcattgcccattttgtcc 45793957  T
Q  135 attgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    ||||||||||||||||||||||||||||||||| ||||  |   ||||| ||||||||||||||||||| ||| |||||||||||||| |||||    
T  45793956 attgaaatatcaacaaaaataagcattgtcttccaaacttgcatgttccacaaaatatattcagcaaatatcaactcatcttcaagtctttgat 45793863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 45795389 - 45795537
Alignment:
Q  83 ccttggtatgtcagttaatcttttgagagagcagtccttgtcttttttgtccattgaaatatcaacaaaaataagcattgtctt---caaaacaagtccg 179  Q
    ||||||| ||| |||||||||||| |||||   || ||||||  |||||| ||| ||| |||||||||||||||||||||||||   ||||||||||  |    
T  45795389 ccttggtgtgttagttaatctttttagagaatggttcttgtccattttgttcatcgaattatcaacaaaaataagcattgtcttcttcaaaacaagtatg 45795488  T
Q  180 ttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
     |||||||||||||||| ||||||| || ||||||||||||| ||||||    
T  45795489 ctccgcaaaatatattcggcaaatgacacctcatcttcaagttcttgat 45795537  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 45794120 - 45794266
Alignment:
Q  85 ttggtatgtcagttaatcttttgagagagcagtccttgtcttttttgtccattgaaatatcaacaaaaataagcattg---tcttcaaaacaagtccgtt 181  Q
    ||||| ||| |||||||||||| ||| |   || ||||||  |||||||||||||| |||||||||||||||||||||   ||||||||||||||  | |    
T  45794120 ttggtgtgttagttaatcttttaagataatggttcttgtccattttgtccattgaattatcaacaaaaataagcattgtcttcttcaaaacaagtatgct 45794219  T
Q  182 ccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    || |||||||||||| ||||||| ||  |||||||||||| ||||||    
T  45794220 ccccaaaatatattcggcaaatgacacatcatcttcaagttcttgat 45794266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 228
Target Start/End: Complemental strand, 17773285 - 17773087
Alignment:
Q  31 caccttaaggagatacagctgggtcaaattcaagttgacacatgatagagccccttggtatgtcagttaatcttttgagagagcagtccttgtctttttt 130  Q
    ||||||||||||| |||| ||  ||||||| |||||| ||  ||| ||||||||||||||| || |||||||||||||| || |  | |||||   ||      
T  17773285 caccttaaggagacacagttgaatcaaatttaagttggcatgtgacagagccccttggtatatcggttaatcttttgagggaacgatacttgttagttag 17773186  T
Q  131 gtccattgaaatatcaacaaaaataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcat-cttcaagtccttgat 228  Q
     ||||||||| |||| | ||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||||| ||| || | |||||| ||||||||    
T  17773185 atccattgaagtatcgaaaaatataagcattgtgtgcaaaacaagtccgttacgcaagatatattcagcaaatgccaggtcctccttcaaatccttgat 17773087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Original strand, 46839732 - 46839808
Alignment:
Q  152 aataagcattgtcttcaaaacaagtccgttccgcaaaatatattcagcaaatgtcagctcatcttcaagtccttgat 228  Q
    ||||| ||||||||||||||||||||| ||   ||||||||| ||| |||||   |||||||||  |||||||||||    
T  46839732 aataatcattgtcttcaaaacaagtccttttttcaaaatatactcaacaaataatagctcatctggaagtccttgat 46839808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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