View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3994_high_21 (Length: 234)

Name: NF3994_high_21
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3994_high_21
NF3994_high_21
[»] chr8 (4 HSPs)
chr8 (121-198)||(10806665-10806742)
chr8 (10-87)||(14919106-14919183)
chr8 (7-59)||(9790632-9790684)
chr8 (23-60)||(29526998-29527035)
[»] chr2 (8 HSPs)
chr2 (1-87)||(18334103-18334189)
chr2 (1-79)||(43378272-43378350)
chr2 (24-79)||(35499541-35499596)
chr2 (16-62)||(10234864-10234910)
chr2 (19-53)||(11002393-11002427)
chr2 (19-56)||(26311155-26311192)
chr2 (1-65)||(29898573-29898638)
chr2 (24-56)||(33033644-33033676)
[»] chr6 (1 HSPs)
chr6 (15-79)||(8460780-8460844)
[»] chr1 (5 HSPs)
chr1 (1-65)||(12502990-12503054)
chr1 (9-54)||(32122452-32122497)
chr1 (15-87)||(7050893-7050965)
chr1 (15-53)||(33799148-33799186)
chr1 (23-53)||(41936093-41936123)
[»] chr5 (2 HSPs)
chr5 (1-87)||(16422908-16422993)
chr5 (1-60)||(4637657-4637716)
[»] chr3 (4 HSPs)
chr3 (15-87)||(4995433-4995505)
chr3 (19-56)||(30187266-30187303)
chr3 (15-52)||(41736492-41736529)
chr3 (15-87)||(33855962-33856034)
[»] scaffold0879 (1 HSPs)
scaffold0879 (1-79)||(2686-2765)
[»] chr4 (1 HSPs)
chr4 (1-79)||(24468423-24468502)
[»] chr7 (7 HSPs)
chr7 (15-67)||(13851670-13851722)
chr7 (19-54)||(25021239-25021274)
chr7 (10-56)||(13451403-13451449)
chr7 (11-48)||(924038-924075)
chr7 (11-56)||(9604264-9604309)
chr7 (11-56)||(9831835-9831880)
chr7 (10-54)||(42282878-42282922)
[»] scaffold1951 (1 HSPs)
scaffold1951 (19-56)||(477-514)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 10806742 - 10806665
Alignment:
Q  121 gattaacaaacacaaaatgttaatgctaatacaaagttaaatcgttgtggaggtatttacttttcttttaaatcttct 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10806742 gattaacaaacacaaaatgttaatgctaatacaaagttaaatcgttgtggaggtatttacttttcttttaaatcttct 10806665  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 14919106 - 14919183
Alignment:
Q  10 tttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    |||| |||||| | ||||||||||||||||||||||||||||||  | ||| ||||||  ||| |||||| |||||||    
T  14919106 tttgggtggttttcttttgcacgccttgtgcgagatgaatcacttgtgttgatctaatatattccattttgacttgtt 14919183  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 9790684 - 9790632
Alignment:
Q  7 aactttgagtggttcttttttgcacgccttgtgcgagatgaatcactcttttt 59  Q
    ||||||||| |||||| |||||||||||||||| |||||||| ||||| ||||    
T  9790684 aactttgagcggttctcttttgcacgccttgtgtgagatgaaccactcctttt 9790632  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 29526998 - 29527035
Alignment:
Q  23 tttttgcacgccttgtgcgagatgaatcactctttttg 60  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  29526998 tttttgtacgccttgtgcgagatgaatcactctctttg 29527035  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 18334189 - 18334103
Alignment:
Q  1 tgtacgaactttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    ||||| |||||||||| ||||| |||||||||||||||| |||||||| ||||| |||||||||| || ||||||||||| ||||||    
T  18334189 tgtacaaactttgagtagttctcttttgcacgccttgtgtgagatgaaccactccttttgttctatttaatttcattttagcttgtt 18334103  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 43378272 - 43378350
Alignment:
Q  1 tgtacgaactttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcatttt 79  Q
    ||||| ||||||||||||||||  |||||||| |||||| |||||||| ||||| ||||||| ||||| ||||||||||    
T  43378272 tgtacaaactttgagtggttctcctttgcacgtcttgtgtgagatgaaccactcattttgttataattaatttcatttt 43378350  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 35499596 - 35499541
Alignment:
Q  24 ttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcatttt 79  Q
    |||||||| |||||||| ||||||||||||||||||  ||||||  ||||||||||    
T  35499596 ttttgcacaccttgtgcaagatgaatcactctttttaatctaatatatttcatttt 35499541  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 10234910 - 10234864
Alignment:
Q  16 tggttcttttttgcacgccttgtgcgagatgaatcactctttttgtt 62  Q
    ||||||| ||||||||||||| ||||||||||| |||||||| ||||    
T  10234910 tggttctcttttgcacgccttatgcgagatgaaccactctttgtgtt 10234864  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 11002393 - 11002427
Alignment:
Q  19 ttcttttttgcacgccttgtgcgagatgaatcact 53  Q
    |||| ||||||||||||||||||||||||||||||    
T  11002393 ttctcttttgcacgccttgtgcgagatgaatcact 11002427  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 26311155 - 26311192
Alignment:
Q  19 ttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  26311155 ttctcttttgcacaccttgtgcgagatgaatcactctt 26311192  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29898573 - 29898638
Alignment:
Q  1 tgtacgaactttgagtggttct-tttttgcacgccttgtgcgagatgaatcactctttttgttcta 65  Q
    ||||| ||||||| |||| ||| |||||||||||||| | ||||||||| ||||||||||| ||||    
T  29898573 tgtacaaactttgggtggatctctttttgcacgccttatacgagatgaaccactctttttgatcta 29898638  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 33033676 - 33033644
Alignment:
Q  24 ttttgcacgccttgtgcgagatgaatcactctt 56  Q
    |||||||| ||||||||||||||||||||||||    
T  33033676 ttttgcacaccttgtgcgagatgaatcactctt 33033644  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 8460780 - 8460844
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcatttt 79  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||    
T  8460780 gtggttctcttttgcacgccttgtgcgagatgaatcactcattttgttttaattaattccatttt 8460844  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12503054 - 12502990
Alignment:
Q  1 tgtacgaactttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttcta 65  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  12503054 tgtacaaactttgagtggctctcttttgcacgccttgtgcgagatgaatcactccttttgatcta 12502990  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 32122452 - 32122497
Alignment:
Q  9 ctttgagtggttcttttttgcacgccttgtgcgagatgaatcactc 54  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  32122452 ctttgagtggttctcttttgcacgccttgtgcgagatgaaccactc 32122497  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7050893 - 7050965
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    |||||||| |||||||| | |||| ||||||||||||||||||||| ||||||  ||| |||||| |||||||    
T  7050893 gtggttctcttttgcacacattgtacgagatgaatcactctttttgatctaatatattccattttgacttgtt 7050965  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 33799186 - 33799148
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcact 53  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  33799186 gtggttctcttttgcacaccttgtgcgagatgaatcact 33799148  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 41936093 - 41936123
Alignment:
Q  23 tttttgcacgccttgtgcgagatgaatcact 53  Q
    |||||||||||||||||||||||||||||||    
T  41936093 tttttgcacgccttgtgcgagatgaatcact 41936123  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16422993 - 16422908
Alignment:
Q  1 tgtacgaactttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    ||||| |||||||||||||||| |||| |||| ||||| ||| ||||| ||||| ||||||||||||| ||||| ||||| ||||||    
T  16422993 tgtacaaactttgagtggttctcttttacacgtcttgt-cgaaatgaaccactccttttgttctaattaatttccttttagcttgtt 16422908  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4637657 - 4637716
Alignment:
Q  1 tgtacgaactttgagtggttcttttttgcacgccttgtgcgagatgaatcactctttttg 60  Q
    ||||| |||||||||||||||| ||||||||| ||||||| ||||||| ||||| |||||    
T  4637657 tgtacaaactttgagtggttctcttttgcacgtcttgtgcaagatgaaccactccttttg 4637716  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 4995433 - 4995505
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    |||||||| ||||||||||||||||||||||||| |||||||| |||| || |  ||| ||||||| ||||||    
T  4995433 gtggttctcttttgcacgccttgtgcgagatgaaccactctttgtgttatattatattccattttagcttgtt 4995505  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 30187303 - 30187266
Alignment:
Q  19 ttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30187303 ttctcttttgcacaccttgtgcgagatgaatcactctt 30187266  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 41736529 - 41736492
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcac 52  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  41736529 gtggttctcttttgcacgccttgtgcaagatgaatcac 41736492  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 33856034 - 33855962
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcattttaacttgtt 87  Q
    |||||||| ||||| |  ||||||| ||||||||||||||||| || ||||||   |||||||||| ||||||    
T  33856034 gtggttctcttttgtataccttgtgtgagatgaatcactctttgtgatctaatatttttcattttagcttgtt 33855962  T

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Target: scaffold0879 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 2686 - 2765
Alignment:
Q  1 tgtacgaactttgagtggttct-tttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcatttt 79  Q
    ||||| || ||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| || |||| ||| ||||||    
T  2686 tgtacaaaatttaagtggttctctttttgcacgtcttgtgcgagatgaaccactctttttgatcaaattaattccatttt 2765  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 24468423 - 24468502
Alignment:
Q  1 tgtacgaactttgagtggttct-tttttgcacgccttgtgcgagatgaatcactctttttgttctaattcatttcatttt 79  Q
    ||||| || ||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| || |||| ||| ||||||    
T  24468423 tgtacaaaatttaagtggttctctttttgcacgtcttgtgcgagatgaaccactctttttgatcaaattaattccatttt 24468502  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 13851670 - 13851722
Alignment:
Q  15 gtggttcttttttgcacgccttgtgcgagatgaatcactctttttgttctaat 67  Q
    |||||||| |||||||| |||||| |||||||||||||||||| || ||||||    
T  13851670 gtggttctcttttgcacaccttgtacgagatgaatcactctttgtgatctaat 13851722  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 25021274 - 25021239
Alignment:
Q  19 ttcttttttgcacgccttgtgcgagatgaatcactc 54  Q
    |||| |||||||||||||||||||||||||||||||    
T  25021274 ttctcttttgcacgccttgtgcgagatgaatcactc 25021239  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 13451403 - 13451449
Alignment:
Q  10 tttgagtggttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    |||| ||||||||||||||||| ||||||  ||||||||||||||||    
T  13451403 tttgggtggttcttttttgcacaccttgtatgagatgaatcactctt 13451449  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 924038 - 924075
Alignment:
Q  11 ttgagtggttcttttttgcacgccttgtgcgagatgaa 48  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  924038 ttgagtggttctcttttgcacaccttgtgcgagatgaa 924075  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 9604309 - 9604264
Alignment:
Q  11 ttgagtggttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    ||||||| || | |||||||| ||||||||||||||||||||||||    
T  9604309 ttgagtgattttcttttgcacaccttgtgcgagatgaatcactctt 9604264  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 9831880 - 9831835
Alignment:
Q  11 ttgagtggttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    ||||||| || | |||||||| ||||||||||||||||||||||||    
T  9831880 ttgagtgattttcttttgcacaccttgtgcgagatgaatcactctt 9831835  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 42282878 - 42282922
Alignment:
Q  10 tttgagtggttcttttttgcacgccttgtgcgagatgaatcactc 54  Q
    |||| ||| |||| |||||||||||||||| ||||||||||||||    
T  42282878 tttgggtgtttctcttttgcacgccttgtgggagatgaatcactc 42282922  T

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Target: scaffold1951 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 514 - 477
Alignment:
Q  19 ttcttttttgcacgccttgtgcgagatgaatcactctt 56  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  514 ttctcttttgcacaccttgtgcgagatgaatcactctt 477  T

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