View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_4 (Length: 413)
Name: NF3994_high_4
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 406
Target Start/End: Complemental strand, 46018420 - 46018030
Alignment:
| Q |
16 |
atatgtacacttatattctgcataaacacttttggatgcatttcaaaactgaaaaagtcttgagttgtctaggcgatgagtcttgaagagggtatataac |
115 |
Q |
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| T |
46018420 |
atatgtacacttatattctgcataaacacttttggatgcatttcaaaactgaaaaagtcttgagttgtctaggcgatgagtcttgaagagggtatataac |
46018321 |
T |
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| Q |
116 |
tatgtttcaaaactttttattttcactttttgttgctgatatcctaattctatccttcaggcctgttgagtgcttattctacaagctttgacctgccatt |
215 |
Q |
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| T |
46018320 |
tatgtttcaaaactttttattttcactttttgttgctgatatcctaattctatccttcaggcctgttgagtgcttattctacaagctttgacctgccatt |
46018221 |
T |
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| Q |
216 |
tccgtgccaaccagaaatgtggccgactacctcaatctcacaaagtagccttgttggttctgaattttgtgatcaaatggcagccttgggagaaatgtcg |
315 |
Q |
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| T |
46018220 |
tccgtgccaaccagaaatgtggccgactacctcaatctcacaaagtggccttgttggttctgaattttgtgatcaaatggcagccttgggagaaatgtcg |
46018121 |
T |
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| Q |
316 |
tcgccatacttttctggagaagaggtatcacgggttggtctatttggaagttacacgttggaacaagtaaatgcaaatcctctgtcctttg |
406 |
Q |
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| T |
46018120 |
tcgccatacttttctggagaagaggtatcacgggttggtctatttggaagttacacgttggaacaagtaaatgcaaatcctctgtcctttg |
46018030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 46031046 - 46030914
Alignment:
| Q |
16 |
atatgtacacttatattctgcataaacacttttggatgcatttcaaaactgaaaaagtcttgagtt-gtctaggcgatgagtcttgaagagggtata-ta |
113 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||| | |||||||||||||||||||| || |
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| T |
46031046 |
atatatacacttatattctgcataaaaccttttggatgcatttcaaaactgaaaaagtctcaagttggtataggtgttgagtcttgaagagggtatatta |
46030947 |
T |
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| Q |
114 |
actatgtttcaaaactttttattttcacttttt |
146 |
Q |
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|||| |||| |||||| | ||||||| ||||| |
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| T |
46030946 |
actacgtttaaaaactactaattttcaattttt |
46030914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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