View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_5 (Length: 345)
Name: NF3994_high_5
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 42169271 - 42169406
Alignment:
| Q |
210 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga |
309 |
Q |
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| T |
42169271 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagatttgtcaaagatgtcattagaaga |
42169370 |
T |
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| Q |
310 |
agctttcactcttgctcgtgctttcagccattatct |
345 |
Q |
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| T |
42169371 |
agctttcactcttgctcgtgctttcagccattatct |
42169406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 42169174 - 42169216
Alignment:
| Q |
95 |
ttttcccccttgctgaatgtgaaaatctatgaagcactgacac |
137 |
Q |
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| T |
42169174 |
ttttcccccttgcttaatgtgaaaatctatgaagcactgacac |
42169216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 42169212 - 42169253
Alignment:
| Q |
151 |
gacacgcctttgataagtgagtgctagtgaatgatgtttcta |
192 |
Q |
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| T |
42169212 |
gacacgcctttcataagtgagtaatagtgaatgatgtttcta |
42169253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 21686150 - 21686047
Alignment:
| Q |
210 |
ggcagagtgcatgcaatatgaggcaagcaggtatagtgaacatggctgagttacttgagaagcagttagcttcagagttgtcaaagatgtcattagaaga |
309 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21686150 |
ggcagagtggatgtaatatgaggcaagcaggtatagtgaacatggctgagttaattgagaagcagttagcttcagagttgtcaaagatgtctttagaaga |
21686051 |
T |
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| Q |
310 |
agct |
313 |
Q |
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|||| |
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| T |
21686050 |
agct |
21686047 |
T |
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