View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_8 (Length: 335)
Name: NF3994_high_8
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 46720961 - 46721278
Alignment:
| Q |
18 |
aaaattacaccagcatcttcaattttagaagttacagcatataattagacaatcacagtataaatatattctcctatttttgacatgagttttaattagt |
117 |
Q |
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| T |
46720961 |
aaaattacaccagcatcttcaattttagaagttacagcatataattagacaatcacagtataaatatattctcctatttttgacatgagttttaattagt |
46721060 |
T |
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| Q |
118 |
acatcaaacattactcatctaaataattaagatatttcaggtacatttcatctcgctaatccccttnnnnnnnctgttcctaaatccaaacacaaaaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46721061 |
acatcaaacattactcatctaaataattaagatatttcaggtacatttcatctcgctaatccccttaaaaaaactgttcctaaatccaaacacaaaaacc |
46721160 |
T |
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| Q |
218 |
agcttttcggttggagcaagagtctccctatgcatataattgttacaaagtcataatcttctcatcacccttcaaagattttgaaaaaagtaaaacagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46721161 |
agcttttcggttggagcaagagtctccctatgcatataattgttacaaagtcataatcttctcatcacccttcaaagattttgaaaaaagtaaaacagat |
46721260 |
T |
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| Q |
318 |
aaaataaataacatacaa |
335 |
Q |
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|||||||||||||||||| |
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| T |
46721261 |
aaaataaataacatacaa |
46721278 |
T |
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