View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_high_9 (Length: 332)
Name: NF3994_high_9
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 48023269 - 48023600
Alignment:
| Q |
1 |
ctcaaaacctgttgaacattgagcttgatatgttttatggtccttgggcggagctgtttgtggccattctaaattgagaaattggtcggtgagatttagg |
100 |
Q |
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| T |
48023269 |
ctcaaaacctgttgaacattgagcttgatatgttttatggtccttgggcggagctgtttgtggccattctaaattgagaaattggtcggtgagatttagg |
48023368 |
T |
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| Q |
101 |
ctacaaaaaaggagtatgaaccggtcatcactgtgtcttattcagattcaggtacaagtagagcaagaacatattgtgtggaagctccttgtctagattg |
200 |
Q |
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| T |
48023369 |
ctacaaaaaaggagtatgaaccggtcatcactgtgtcttattcagattcaggtacaagtagagcaagaacatattgtgtggaagctccttgtctagattg |
48023468 |
T |
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| Q |
201 |
attagaattagttgcaatgcaacaatttcccaagagtggacatgaatgaagccccttgtcaattctattctaaaagttaagctttgggctgctctccgga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48023469 |
attagaattagttgcaatgcaacaatttcccaagagtagacatgaatgaagccccttgtcaattctattctaaaagttaagctttgggctgctctccgga |
48023568 |
T |
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| Q |
301 |
gtttgatgatagcaaaggagaaatattttgac |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48023569 |
gtttgatgatagcaaaggagaaatattttgac |
48023600 |
T |
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