View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_low_1 (Length: 644)
Name: NF3994_low_1
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 26010 - 25803
Alignment:
| Q |
17 |
acaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaacaag |
116 |
Q |
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| T |
26010 |
acaattgatagtggctccaaagtagtgatattccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagacaaggatgctgaacaag |
25911 |
T |
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| Q |
117 |
cctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaaca |
216 |
Q |
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| T |
25910 |
cctacgtaattatgagagactggatacatgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtc-agcacttgcgttttaaca |
25812 |
T |
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| Q |
217 |
tgcatatga |
225 |
Q |
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||||||||| |
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| T |
25811 |
tgcatatga |
25803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 415 - 636
Target Start/End: Original strand, 18097214 - 18097438
Alignment:
| Q |
415 |
agggaaaataaaaagtacttgttttatattaatattaattaaattaccttctctccnnnnnnnnnnnt--tttaattaaattatcactacaatnnnnnnn |
512 |
Q |
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| T |
18097214 |
agggaaaataaaaagtagttgttttatattaatattgattaaattaccttctctcaaaaaaaaaattaaattaaattaaattatcactacaataaaaaaa |
18097313 |
T |
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| Q |
513 |
-cacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
611 |
Q |
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| T |
18097314 |
acacaatttactgaaacccttttactcctcctctgtcaatgtcatcatctactaatcgtccatggcagtttcatgggtgagaagtagcttcagttcatca |
18097413 |
T |
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| Q |
612 |
tattcgtttcttagtgatctctgct |
636 |
Q |
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| T |
18097414 |
tattcgtttcttagtgatctctgct |
18097438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 18097009 - 18097056
Alignment:
| Q |
359 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
406 |
Q |
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| T |
18097009 |
aggggtttggtagatccatgttatatttatttttataaatggatagta |
18097056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 18096939 - 18096973
Alignment:
| Q |
289 |
ataattttattcccattcccaaaataaaccgctag |
323 |
Q |
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| T |
18096939 |
ataattttattcccattcccaaaataaatcgctag |
18096973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 21352585 - 21352405
Alignment:
| Q |
46 |
attccctggtagaggtcatggatttgcccaccgacctgaatctgtggaagaagaca--aggatgctgaacaagcctacgtaattatgagagactggatac |
143 |
Q |
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|||||||| ||||||||| ||||||||||||||| | | |||| || | |||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
21352585 |
attccctgatagaggtcacggatttgcccaccgatccggatctctgaacgaagacgcgaggatgctgaacaagcttatgtaattatgagagactggatat |
21352486 |
T |
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| Q |
144 |
atgaacatttggtgtaaaaatgaaatgctttcagactatataaataatggtgtctaacacttgcgttttaacatgcatatga |
225 |
Q |
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| T |
21352485 |
ttgaacatttggtgtaaaaatgaaatgttttaagactatatgaataaaggtatc-aacacttgcgtcttaacatgcatatga |
21352405 |
T |
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