View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_low_10 (Length: 303)
Name: NF3994_low_10
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 27956602 - 27956907
Alignment:
| Q |
1 |
ttgttttggcaacgtaaaacaaacttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattggtttaaagcagtc |
100 |
Q |
| |
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| T |
27956602 |
ttgttttggcaacgtaaaacaaatttatgttacagcttagaacttgatcgcaaacatttatttgaagatacaatactcatagcattagtttaaagcagtc |
27956701 |
T |
|
| Q |
101 |
ttcatgattttatgtattttgaaagacactc-----------------cttgtacttattttcgaacttaagtatatctaagcacnnnnnnngttaccaa |
183 |
Q |
| |
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|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27956702 |
ttcatgattttatgtattttgagagacgctcctttgtgtaccatatgtcttgtacttattttcgaacttaagtatatctaagcactttttttgttaccaa |
27956801 |
T |
|
| Q |
184 |
gttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccacccttaacc |
283 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
27956802 |
gttagaagtacgatgtttctaccaccgcttaacaatgacttttctaatcttccaacttcacgccaccaaatctgaaaccgc--atccaccacccttaacc |
27956899 |
T |
|
| Q |
284 |
actacctt |
291 |
Q |
| |
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|||||||| |
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|
| T |
27956900 |
actacctt |
27956907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 80 - 301
Target Start/End: Complemental strand, 16332172 - 16331950
Alignment:
| Q |
80 |
tagcattggtttaaagcagtcttcatgattttatgtattttgaaagacactcctt---gtac-ttattttcgaacttaagtatatctaagcacnnnnnnn |
175 |
Q |
| |
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||||||| ||||| || | ||||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||| |||||||| |
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| T |
16332172 |
tagcattagtttagagtactcttcatgattttatgtcttttgaaagacactcctttgtgtaccttattttcaaatttaagtatacctaagcactttttt- |
16332074 |
T |
|
| Q |
176 |
gttaccaagttagaagtacgacgtttctaccaccgtttaacaatgacttttctaatcctccaacttcacgccaccaaatctaaaaccgcaaatccaccac |
275 |
Q |
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||||| | |||| |||||| | |||| || ||| ||||||||||||||||||| ||| |||||||||| |||||| ||| ||||| |||||||||||||| |
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| T |
16332073 |
gttacgatgttataagtacaaagtttttatcactgtttaacaatgacttttcttatcttccaacttcaggccacc-aatttaaaa-cgcaaatccaccac |
16331976 |
T |
|
| Q |
276 |
ccttaaccactacctttgcttctcca |
301 |
Q |
| |
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|||||||||||||||| | ||||||| |
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| T |
16331975 |
ccttaaccactaccttggtttctcca |
16331950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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