View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3994_low_2 (Length: 439)

Name: NF3994_low_2
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3994_low_2
NF3994_low_2
[»] chr1 (8 HSPs)
chr1 (13-423)||(32919521-32919920)
chr1 (13-96)||(32896089-32896172)
chr1 (13-109)||(32935755-32935851)
chr1 (13-96)||(32885369-32885452)
chr1 (24-145)||(19503478-19503608)
chr1 (349-414)||(32953872-32953936)
chr1 (14-96)||(32953150-32953232)
chr1 (350-414)||(32936346-32936411)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 32919521 - 32919920
Alignment:
Q  13 cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagtgaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32919521 cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagtgaa 32919620  T
Q  113 gacccagaatgcatagtatagttggtaactttaaatggaaaggttgtagaagtgtagatccaagtgagaatagaataaagtttttgcactatgaggattg 212  Q
    |||||||||||||||||||| |  |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  32919621 gacccagaatgcatagtataatcagtaactttagctggaaaggttgtagaagtgtatatccaagtgagaatagaataaagtttttgcatcatgaggattg 32919720  T
Q  213 aggaaggatttgtaggtttattctagttatatatatatatacnnnnnnnnnnnnnnnngcaaaaccaaggcttcacaaagttcgtttttaccttcctgtt 312  Q
    |||||| ||||||||||||||||| | ||||||||  | |                  ||||||||||||||||||||||||||||||||||||||||||    
T  32919721 aggaagaatttgtaggtttattctggctatatatacgttt---------------tttgcaaaaccaaggcttcacaaagttcgtttttaccttcctgtt 32919805  T
Q  313 ttacaaccagtaacaaaattaaataagattct----caatgaaaggagaaaaagatagttgattatcataatgtgcattccataactcattacacaccac 408  Q
    ||||||||||||||||||||||||||||||||    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32919806 ttacaaccagtaacaaaattaaataagattctctcccaatcaaaggagaaaaagatagttgattatcataatgtgcattccataactcattacacaccac 32919905  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 32896089 - 32896172
Alignment:
Q  13 cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa 96  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32896089 cataggtggttttattgtcatcatgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatatcaagaccaa 32896172  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 32935755 - 32935851
Alignment:
Q  13 cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaagcagtgcaatagt 109  Q
    ||||||||  |||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||    
T  32935755 cataggtgcatttattgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagagattgatttgaagaccaagcagtgcaatagt 32935851  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 32885369 - 32885452
Alignment:
Q  13 cataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa 96  Q
    ||||||||  |||||||| ||| ||||| | ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  32885369 cataggtgcatttattgtgatcatgggtttgtatctgttgctgtgggggaaagaaggtgacaaagaggttgatttcaagaccaa 32885452  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 19503608 - 19503478
Alignment:
Q  24 ttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa---------gcagtgcaatagtgaaga 114  Q
    ||||||||||| |||| ||||| ||||| |||||||| ||||||||||||| ||| |||||||||||||||||         ||||||| ||||||||||    
T  19503608 ttattgtcatcatgggactatacttgttactgtgggggaaagaaggtgacagagaggttgatttcaagaccaaaggtaaattgcagtgctatagtgaaga 19503509  T
Q  115 cccagaatgcatagtatagttggtaacttta 145  Q
    || |||||||| | ||||||  |||||||||    
T  19503508 ccaagaatgcaaaatatagtcagtaacttta 19503478  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 32953872 - 32953936
Alignment:
Q  349 gaaaggagaaaaagatagttgattatcataatgtgcattccataactcattacacaccacaaaata 414  Q
    |||||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||    
T  32953872 gaaaggagaacaagatagttgattatcataatgtgcatttcttaactca-tacacaccacaaaata 32953936  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 32953150 - 32953232
Alignment:
Q  14 ataggtggttttattgtcatcgtgggtctatatttgttgctgtggggtaaagaaggtgacaaagatgttgatttcaagaccaa 96  Q
    |||||||  ||||| |||||| ||||| | ||||||||||||||||| ||||||||||||||||  || ||||||||||||||    
T  32953150 ataggtgcatttatcgtcatcatgggtttgtatttgttgctgtgggggaaagaaggtgacaaagtggtcgatttcaagaccaa 32953232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 32936346 - 32936411
Alignment:
Q  350 aaaggagaaaaagatagttgattatcataa-tgtgcattccataactcattacacaccacaaaata 414  Q
    |||| |||| ||| |||||||||||||||| |||||||| | ||| ||||||||||||| ||||||    
T  32936346 aaagaagaacaaggtagttgattatcataattgtgcatttcttaattcattacacaccataaaata 32936411  T

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