View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_low_23 (Length: 204)
Name: NF3994_low_23
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 7e-88; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 9161701 - 9161872
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161701 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactc |
9161800 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
189 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9161801 |
ttaacatctctatggataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
9161872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 9155789 - 9155960
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||| |||||||||||||||||| |
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| T |
9155789 |
cattgttgctatctcggtttgatcaagtggaactaacctcgaagctccaaaatcggaaactttcgctgtgtaattgtcatccaagagaatgttggtactt |
9155888 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
189 |
Q |
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|| ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9155889 |
ttgacatctctatggataatcggtattgatgcagatgaatgtagatacgataaagctccggctgtctctgct |
9155960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 9118748 - 9118580
Alignment:
| Q |
21 |
tgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactttta |
120 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||| |
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| T |
9118748 |
tgttgctatctcggtttgatcaagtggaaccaatttggaagctccgaaatcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactctta |
9118649 |
T |
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| Q |
121 |
acatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
189 |
Q |
| |
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||||||||||| ||||| || | ||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9118648 |
acatctctatggataattggaaatgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9118580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 9170527 - 9170698
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| || |||||||| || || |||||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
9170527 |
cattgttgctatctctgtttgatcaagtggaaccaatcttgaagctccgaagtcggaaactttggcagtgtaattgtcatccaagagaatgttggtactc |
9170626 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
189 |
Q |
| |
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|||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9170627 |
ttaacatctctatggataattggaattgatgcagatgaatgtagatacgataaagctccagctgtctctgct |
9170698 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 9200094 - 9200261
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
9200094 |
cattgttgctatctctgtttgatcaagtggaaccaatctggaagctccaaagtcagaaacttttgcggtgtaattgtcatccaagagaatgttggtactc |
9200193 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctc |
185 |
Q |
| |
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||||||||||| || ||||| || |||||||||| |||||||| ||| ||||||||||| |||||||| |
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| T |
9200194 |
ttaacatctctgtggataattggaattgatgcagctgaatgtagatatgataaagctccagctgtctc |
9200261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 9218610 - 9218781
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || |||||||| || || |||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
9218610 |
cattgtcgctatctcggtttgatcaagtggaaccaatcttgaagctccgaagtcggaaacttttgcagtgtaattgtcatccaagagaatgttggtactc |
9218709 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagctccggctgtctctgct |
189 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||| |||||||| ||| |||||||| || |||||||||||| |
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| T |
9218710 |
ttaacatctctatggataattggaattgatgcagctgaatgtagatatgataaagcaccagctgtctctgct |
9218781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 9229514 - 9229653
Alignment:
| Q |
37 |
tgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaataa |
136 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| |||| |
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| T |
9229514 |
tgatcaagtggaaccaatcttgaagcaccaaaatcagacacttttgcagtgtaattgtcatccaagagaatgttggcacttttgacatctctatggataa |
9229613 |
T |
|
| Q |
137 |
taggtattgatgcagatgaatgtaaatacgataaagctcc |
176 |
Q |
| |
|
| |||| |||||||||||||||| ||| ||||||||||| |
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| T |
9229614 |
ttggtaaggatgcagatgaatgtagatatgataaagctcc |
9229653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 1815895 - 1816019
Alignment:
| Q |
34 |
gtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaa |
133 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||| || ||||| || ||| | |||||||||||||||| | ||| || ||||||||||| | |
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|
| T |
1815895 |
gtttgatcaagtggaatcaaccttgatgctccaaaatctgacactttagcggtgttggttccatctaagagaatgttagcactcttgacatctctatgga |
1815994 |
T |
|
| Q |
134 |
taataggtattgatgcagatgaatg |
158 |
Q |
| |
|
|||| |||||||| |||| |||||| |
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|
| T |
1815995 |
taatgggtattgaggcagctgaatg |
1816019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 1868763 - 1868607
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| || |||||||||||||| || ||||| || ||| | ||||||||||||||| ||| |
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| T |
1868763 |
cattgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgatactttggcggtgttggttctatctaagagaatgttatcactc |
1868664 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgtaaatacgataaagct |
174 |
Q |
| |
|
|| ||||||||||| || || |||||||| ||| ||||||||| ||| || |||||| |
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|
| T |
1868663 |
ttgacatctctatggatgatgggtattgaggcatatgaatgtagatatgacaaagct |
1868607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1857165 - 1857023
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||| || |||||||||||||| || ||||| || ||| | |||||||||||||||| ||| |
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| T |
1857165 |
cattgtggctatttcagtttgatcaagtggaaccaatcttgaagctccaaaatccgacactttggcggtgttggttccatctaagagaatgttatcactc |
1857066 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgta |
160 |
Q |
| |
|
|| ||||||||||| || || ||| |||| ||| ||||||||| |
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|
| T |
1857065 |
ttgacatctctatggatgatgggtgttgaggcatatgaatgta |
1857023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1843154 - 1843012
Alignment:
| Q |
18 |
cattgttgctatctcggtttgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtactt |
117 |
Q |
| |
|
|||||| ||||| || |||||||||| ||||||||| || |||||||||||||| || ||||| || ||| | ||||||||||||||| ||| |
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| T |
1843154 |
cattgtggctatttcagtttgatcaattggaaccaatcttgaagctccaaaatctgatactttggctgtgttggttctatctaagagaatgttatcactc |
1843055 |
T |
|
| Q |
118 |
ttaacatctctatgaataataggtattgatgcagatgaatgta |
160 |
Q |
| |
|
|| ||||||||||| || || |||||||| ||| ||||||||| |
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| T |
1843054 |
ttgacatctctatggattattggtattgaggcatatgaatgta |
1843012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 40602256 - 40602159
Alignment:
| Q |
37 |
tgatcaagtggaaccaacctcgaagctccaaaatcagaaacttttgcattgtaattgtcatctaagagaatgttggtacttttaacatctctatgaat |
134 |
Q |
| |
|
|||||||| ||||| | | | |||||||||||||||||||| |||||| || |||| |||||| ||| ||||| ||| ||| | |||||||||||| |
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|
| T |
40602256 |
tgatcaagaggaacaatctttgaagctccaaaatcagaaacctttgcaatgagattgccatctaggaggatgtttgtagattttatatctctatgaat |
40602159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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