View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3994_low_3 (Length: 416)

Name: NF3994_low_3
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3994_low_3
NF3994_low_3
[»] chr5 (14 HSPs)
chr5 (220-353)||(3630589-3630722)
chr5 (283-334)||(34191426-34191477)
chr5 (279-334)||(35270698-35270753)
chr5 (295-334)||(32622900-32622939)
chr5 (284-334)||(5015275-5015324)
chr5 (296-334)||(11310468-11310506)
chr5 (296-334)||(18391606-18391644)
chr5 (284-334)||(28207126-28207176)
chr5 (284-334)||(36321511-36321561)
chr5 (287-333)||(41344573-41344619)
chr5 (284-334)||(42505866-42505916)
chr5 (297-330)||(1358516-1358549)
chr5 (378-411)||(3630751-3630784)
chr5 (285-333)||(17861974-17862022)
[»] chr4 (14 HSPs)
chr4 (138-220)||(56633-56715)
chr4 (138-211)||(56024-56097)
chr4 (283-365)||(37725711-37725789)
chr4 (284-334)||(10303528-10303578)
chr4 (284-333)||(14577525-14577574)
chr4 (285-334)||(16304115-16304164)
chr4 (282-334)||(9946419-9946471)
chr4 (287-334)||(30380527-30380574)
chr4 (284-334)||(2649750-2649800)
chr4 (284-334)||(7230274-7230324)
chr4 (284-334)||(12671765-12671815)
chr4 (296-334)||(31780751-31780789)
chr4 (284-334)||(34247434-34247484)
chr4 (293-334)||(28031815-28031856)
[»] chr8 (20 HSPs)
chr8 (138-225)||(10428916-10429003)
chr8 (142-221)||(10429652-10429731)
chr8 (275-334)||(27587206-27587265)
chr8 (284-333)||(8137929-8137978)
chr8 (297-334)||(24838187-24838224)
chr8 (287-334)||(7869658-7869705)
chr8 (284-335)||(13575283-13575334)
chr8 (284-334)||(6314340-6314390)
chr8 (296-334)||(8461853-8461891)
chr8 (296-334)||(9656014-9656052)
chr8 (284-334)||(14303159-14303209)
chr8 (284-334)||(32555248-32555298)
chr8 (284-333)||(5325525-5325574)
chr8 (285-334)||(8717492-8717541)
chr8 (285-334)||(10152451-10152500)
chr8 (285-334)||(10225320-10225369)
chr8 (285-334)||(11602172-11602221)
chr8 (285-334)||(17704008-17704057)
chr8 (297-334)||(33743582-33743619)
chr8 (284-332)||(26252360-26252408)
[»] chr1 (22 HSPs)
chr1 (138-215)||(16151941-16152018)
chr1 (279-333)||(3321480-3321534)
chr1 (142-220)||(16152665-16152743)
chr1 (296-334)||(18335836-18335874)
chr1 (284-334)||(28661489-28661539)
chr1 (284-334)||(29739331-29739381)
chr1 (296-334)||(44507947-44507985)
chr1 (284-334)||(47835801-47835851)
chr1 (284-331)||(31890769-31890816)
chr1 (284-334)||(6000160-6000210)
chr1 (284-330)||(13590104-13590150)
chr1 (284-334)||(29233991-29234041)
chr1 (284-330)||(40735026-40735072)
chr1 (284-334)||(49183167-49183217)
chr1 (296-334)||(50040362-50040400)
chr1 (284-334)||(52267758-52267808)
chr1 (284-334)||(52592444-52592494)
chr1 (296-333)||(6645208-6645245)
chr1 (285-334)||(24506930-24506979)
chr1 (284-333)||(52043267-52043316)
chr1 (282-334)||(21400040-21400092)
chr1 (290-334)||(30382496-30382540)
[»] chr6 (12 HSPs)
chr6 (284-334)||(1514178-1514228)
chr6 (284-334)||(21296752-21296802)
chr6 (287-354)||(2108722-2108789)
chr6 (284-330)||(1030277-1030323)
chr6 (284-334)||(9444951-9445001)
chr6 (284-334)||(12735260-12735310)
chr6 (296-334)||(17935735-17935773)
chr6 (296-334)||(30579865-30579903)
chr6 (284-334)||(31971523-31971573)
chr6 (285-334)||(17382079-17382128)
chr6 (283-331)||(4494891-4494939)
chr6 (285-329)||(5008834-5008878)
[»] chr2 (19 HSPs)
chr2 (284-334)||(18881178-18881228)
chr2 (284-334)||(13528990-13529040)
chr2 (284-334)||(21482536-21482586)
chr2 (284-334)||(29133501-29133551)
chr2 (296-334)||(38603981-38604019)
chr2 (278-334)||(22267501-22267557)
chr2 (283-334)||(22558970-22559021)
chr2 (287-334)||(43117207-43117254)
chr2 (284-334)||(3197096-3197146)
chr2 (284-334)||(9842219-9842269)
chr2 (284-334)||(12124539-12124589)
chr2 (287-333)||(14925250-14925296)
chr2 (284-334)||(31812972-31813022)
chr2 (293-334)||(28771585-28771626)
chr2 (293-334)||(35685078-35685119)
chr2 (290-334)||(4137991-4138035)
chr2 (286-330)||(10109667-10109711)
chr2 (284-332)||(12353650-12353698)
chr2 (286-334)||(34464426-34464474)
[»] chr7 (21 HSPs)
chr7 (284-333)||(47677595-47677644)
chr7 (284-334)||(20576427-20576477)
chr7 (284-334)||(35103490-35103540)
chr7 (284-333)||(18378396-18378445)
chr7 (290-330)||(27383733-27383773)
chr7 (283-334)||(45724610-45724661)
chr7 (293-335)||(3196658-3196700)
chr7 (284-334)||(6023303-6023353)
chr7 (284-334)||(10025988-10026038)
chr7 (296-334)||(13044159-13044197)
chr7 (284-330)||(16970990-16971036)
chr7 (284-334)||(19416508-19416558)
chr7 (284-330)||(20205816-20205862)
chr7 (296-334)||(30296339-30296377)
chr7 (296-334)||(41029278-41029316)
chr7 (296-334)||(44406873-44406911)
chr7 (300-334)||(46675916-46675950)
chr7 (284-334)||(48103691-48103741)
chr7 (152-221)||(17050724-17050793)
chr7 (290-334)||(10555360-10555404)
chr7 (286-334)||(44558791-44558839)
[»] chr3 (26 HSPs)
chr3 (286-334)||(43735253-43735301)
chr3 (284-334)||(9598433-9598483)
chr3 (284-334)||(10926463-10926513)
chr3 (284-334)||(32843279-32843329)
chr3 (277-334)||(8127450-8127507)
chr3 (284-333)||(47185822-47185871)
chr3 (282-330)||(26983365-26983413)
chr3 (284-334)||(1149086-1149136)
chr3 (284-334)||(2662086-2662136)
chr3 (284-334)||(3582776-3582826)
chr3 (284-334)||(8174264-8174314)
chr3 (284-334)||(11124764-11124814)
chr3 (284-334)||(16980371-16980421)
chr3 (284-334)||(21506775-21506825)
chr3 (284-334)||(33771684-33771734)
chr3 (284-334)||(35863830-35863880)
chr3 (284-334)||(44579630-44579680)
chr3 (284-334)||(51250250-51250300)
chr3 (293-334)||(7202933-7202974)
chr3 (285-334)||(25340941-25340990)
chr3 (284-333)||(28150739-28150788)
chr3 (285-334)||(35548305-35548354)
chr3 (285-330)||(39677804-39677849)
chr3 (284-333)||(52904161-52904210)
chr3 (293-334)||(54230116-54230157)
chr3 (286-334)||(52575943-52575991)
[»] scaffold0154 (1 HSPs)
scaffold0154 (284-334)||(10774-10824)
[»] scaffold0005 (1 HSPs)
scaffold0005 (284-333)||(239801-239850)
[»] scaffold0259 (1 HSPs)
scaffold0259 (282-334)||(5405-5457)
[»] scaffold0117 (1 HSPs)
scaffold0117 (296-334)||(18299-18337)
[»] scaffold0045 (2 HSPs)
scaffold0045 (283-329)||(63855-63901)
scaffold0045 (283-329)||(71187-71233)
[»] scaffold0040 (1 HSPs)
scaffold0040 (284-334)||(56778-56828)
[»] scaffold0011 (1 HSPs)
scaffold0011 (284-334)||(185257-185307)
[»] scaffold1160 (1 HSPs)
scaffold1160 (290-334)||(1729-1773)
[»] scaffold0188 (1 HSPs)
scaffold0188 (282-334)||(28130-28182)
[»] scaffold0121 (1 HSPs)
scaffold0121 (291-365)||(3565-3636)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 3630589 - 3630722
Alignment:
Q  220 ttaaattaatgcatcaaggcctattttaaactcttatagagtgtctttagggtattctcattaggtcctcgtaagtttagctcagttggttaggacaatg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||||| | |||||     
T  3630589 ttaaattaatgcatcaaggcctattttaaactcttatagagtgtctttagggtactcttattaggtcctcgtgagcttagctcagttggttggaacaata 3630688  T
Q  320 tataaaatatgcaagtaaggttcgaggtttaaac 353  Q
    ||||||||||  | ||||||||||| ||| ||||    
T  3630689 tataaaatatatatgtaaggttcgaagttcaaac 3630722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 34191426 - 34191477
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| || ||||||||||||||| |||||||| ||||||||||||||    
T  34191426 ggtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaag 34191477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 35270753 - 35270698
Alignment:
Q  279 attaggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| |||||||| || ||||||||||||||| |||||||| ||||||||||||||    
T  35270753 attatgtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaag 35270698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 32622900 - 32622939
Alignment:
Q  295 tttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  32622900 tttagctcagttggtatggacaatgtataaaatatgcaag 32622939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 5015275 - 5015324
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||| |||||||||| |||| |||||||||    
T  5015275 gtcctcgtgagtttagctcagttgg-taggacaatgaataatatatgcaag 5015324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 11310506 - 11310468
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  11310506 ttagctcagttggtttggacaatgtataatatatgcaag 11310468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 18391606 - 18391644
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  18391606 ttagctcagttggtaaggacaatgcataaaatatgcaag 18391644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 28207126 - 28207176
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  28207126 gtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 28207176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 36321561 - 36321511
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  36321561 gtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 36321511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 41344573 - 41344619
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||||||| |||||||||||  ||||||| |||||||||||||    
T  41344573 ctcgtaagtttaactcagttggttgagacaatgcataaaatatgcaa 41344619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 42505866 - 42505916
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||| ||||||||||||||  |||||||| |||| |||||||||    
T  42505866 gtcctcgtaagcttagctcagttggtatggacaatgcataatatatgcaag 42505916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 1358549 - 1358516
Alignment:
Q  297 tagctcagttggttaggacaatgtataaaatatg 330  Q
    ||||||||||||||||||||||| ||||||||||    
T  1358549 tagctcagttggttaggacaatgcataaaatatg 1358516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 378 - 411
Target Start/End: Original strand, 3630751 - 3630784
Alignment:
Q  378 ctctcattagcatttttcgaaaaattaacctttg 411  Q
    ||||||||||||||||||||||||||||| ||||    
T  3630751 ctctcattagcatttttcgaaaaattaacatttg 3630784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 17861974 - 17862022
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    ||||||| |||||||||||||||||  |||||||| |||| ||||||||    
T  17861974 tcctcgtgagtttagctcagttggtagggacaatgcataatatatgcaa 17862022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 56633 - 56715
Alignment:
Q  138 gtggattaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagttttgtcct 220  Q
    |||||||||||| |||||||| | | ||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||    
T  56633 gtggattaagtaatccacttgtccttattttattggaaaacagttccaacagcacctagggaactgtttctaagttttctcct 56715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 56097 - 56024
Alignment:
Q  138 gtggattaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataag 211  Q
    |||||||||||| |||||||| | | |||||||||||||| ||||| ||||||||||| |||| ||||| ||||    
T  56097 gtggattaagtaatccacttgtccttattttattggagaagagttctaacagcacctaaggaattgtttctaag 56024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 365
Target Start/End: Complemental strand, 37725789 - 37725711
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaagtaaggttcgaggtttaaaccacaaccactac 365  Q
    ||||||||| || ||||||||||| ||| ||||||||||||||||||||    |||||||| |||||||||| | ||||||||    
T  37725789 ggtcctcgtgagcttagctcagtttgttgggacaatgtataaaatatgc----aaggttcggggtttaaaccccgaccactac 37725711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 10303578 - 10303528
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| ||||||||||||||    
T  10303578 gtcctcgtgagcttagctcagttggtaaggacaatgcataaaatatgcaag 10303528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 14577574 - 14577525
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| ||||||||||||||||| ||||||||| |||| ||||||||    
T  14577574 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaa 14577525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 16304164 - 16304115
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||||||||||||||  |||||||| |||| |||||||||    
T  16304164 tcctcgtaagtttagctcagttggtatggacaatgcataatatatgcaag 16304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 9946419 - 9946471
Alignment:
Q  282 aggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  9946419 aggtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 9946471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 30380527 - 30380574
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||| |||||| |||||||||| |||||||||||||| |||||||||    
T  30380527 ctcgtgagtttaactcagttggtaaggacaatgtataatatatgcaag 30380574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 2649800 - 2649750
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| |||||||||||||||||||||  |||||||| |||| |||||||||    
T  2649800 gtccccgtaagtttagctcagttggtagggacaatgcataatatatgcaag 2649750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 7230274 - 7230324
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  7230274 gtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 7230324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 12671815 - 12671765
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||||   ||||||| ||||||||||||||    
T  12671815 gtcctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaag 12671765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 31780751 - 31780789
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  31780751 ttagctcagttggtaaggacaatgcataaaatatgcaag 31780789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 34247434 - 34247484
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||| || ||||||||||||||||| ||||||||| |||| |||||||||    
T  34247434 gtccttgtgagtttagctcagttggtaaggacaatgcataatatatgcaag 34247484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 28031815 - 28031856
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||||||| | |||||| ||||||||||||||    
T  28031815 agtttagctcagttggttggaacaatgcataaaatatgcaag 28031856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 10429003 - 10428916
Alignment:
Q  138 gtggattaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagttttgtccttaaat 225  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||  |||||||||||||||| |||||||||||||| |||||||||    
T  10429003 gtggaataagtaatccacttgtctcaattttattggaaaacagttaaaacagcacctagggaactgtttataagttttatccttaaat 10428916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 10429652 - 10429731
Alignment:
Q  142 attaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagttttgtcctt 221  Q
    |||||| | |||||||| || || |||||||||||||||| |||||||||| ||||||| ||  | ||||||||||||||    
T  10429652 attaagaaatccacttgtcacaaatttattggagaacagtaccaacagcacatagggaactgcatctaagttttgtcctt 10429731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 27587206 - 27587265
Alignment:
Q  275 tctcattaggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||| || |||||||||||||| ||||||||| || | |||||||||    
T  27587206 tctcattaggtcctcgtgagcttagctcagttggtaaggacaatgcatgatatatgcaag 27587265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 8137929 - 8137978
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    ||||||||||| ||||||||||||||  |||||||| |||||||||||||    
T  8137929 gtcctcgtaagcttagctcagttggtatggacaatgcataaaatatgcaa 8137978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 24838224 - 24838187
Alignment:
Q  297 tagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  24838224 tagctcagttggttaggacaatgcataaaatatgcaag 24838187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 7869705 - 7869658
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||| |||||||||| ||||||||| |||| |||||||||    
T  7869705 ctcgtaagtttaactcagttggtgaggacaatgcataatatatgcaag 7869658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 13575283 - 13575334
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaagt 335  Q
    |||||||| |||||||||||||||||  |||||||| |||| ||||||||||    
T  13575283 gtcctcgtgagtttagctcagttggtagggacaatgcataacatatgcaagt 13575334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 6314390 - 6314340
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||| | ||||||||| ||||||||||||||    
T  6314390 gtcctcgtgagcttagctcagttgataaggacaatgcataaaatatgcaag 6314340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 8461891 - 8461853
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  8461891 ttagctcagttggttgggacaatgcataaaatatgcaag 8461853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 9656052 - 9656014
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  9656052 ttagctcagttggtaaggacaatgcataaaatatgcaag 9656014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 14303159 - 14303209
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||||  ||||||||||||| |||| ||||    
T  14303159 gtcctcgtgagtttagctcagttggtatggacaatgtataatatatacaag 14303209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 32555248 - 32555298
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| ||||||||| |||||||  |||||||| ||||||||||||||    
T  32555248 gtcctcgtgagtttagcttagttggtatggacaatgcataaaatatgcaag 32555298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 5325574 - 5325525
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| ||||||||||||||| ||  ||||||| |||||||||||||    
T  5325574 gtcctcgtgagtttagctcagttgattgagacaatgcataaaatatgcaa 5325525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 8717541 - 8717492
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||| |||||||||||||||||  |||||||| |||| |||||||||    
T  8717541 tcctcgtgagtttagctcagttggtatggacaatgcataatatatgcaag 8717492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 10152451 - 10152500
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||| || ||||||||||||||   ||||||||||||||||||||||    
T  10152451 tcctcgtgagcttagctcagttggtatagacaatgtataaaatatgcaag 10152500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 10225320 - 10225369
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||  ||||||||||||||| |||||||| ||| ||||||||||    
T  10225320 tcctcgtaaacttagctcagttggttgggacaatgcatagaatatgcaag 10225369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 11602221 - 11602172
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||| ||||    
T  11602221 tcctcgtaagtttaactcagttggttgggacaataaataaaatatccaag 11602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 17704008 - 17704057
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  17704008 tcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 17704057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 33743582 - 33743619
Alignment:
Q  297 tagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  33743582 tagctcagttggtgaggacaatgcataaaatatgcaag 33743619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 26252360 - 26252408
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgca 332  Q
    |||||||| || |||||| |||||||| ||| |||||||||||||||||    
T  26252360 gtcctcgtgagcttagcttagttggtttggataatgtataaaatatgca 26252408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 16152018 - 16151941
Alignment:
Q  138 gtggattaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagtttt 215  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||  |||||||||||||||| ||||||||||||||    
T  16152018 gtggaataagtaatccacttgtctcaattttattggaaaacagttaaaacagcacctagggaactgtttataagtttt 16151941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 3321480 - 3321534
Alignment:
Q  279 attaggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||| |||||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  3321480 attacgtcctcgtgagtttagctcgattggttgggacaatgtataaaatatgcaa 3321534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 16152665 - 16152743
Alignment:
Q  142 attaagtagtccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagttttgtcct 220  Q
    |||||| | |||||||| || || |||||||||||||||| |||||||||| ||||||| ||  | |||||||||||||    
T  16152665 attaagaaatccacttgtcacaaatttattggagaacagtaccaacagcacatagggaactgcatctaagttttgtcct 16152743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 18335874 - 18335836
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  18335874 ttagctcagctggttaggacaatgtataaaatatgcaag 18335836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 28661489 - 28661539
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||||| |||||| ||||||| |||||||||    
T  28661489 gtcctcgtaagtttaactcagttggtaaggacattgtataatatatgcaag 28661539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 29739331 - 29739381
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| ||||||||||||||    
T  29739331 gtcctcgttagcttagctcagttggtaaggacaatgcataaaatatgcaag 29739381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 44507985 - 44507947
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  44507985 ttagctcagttggttaggacaatgtataatatatgcaag 44507947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 47835801 - 47835851
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| |||||||||||||||| | |||||| ||||||||||||||    
T  47835801 gtcctcgtaaatttagctcagttggttggaacaatgcataaaatatgcaag 47835851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 31890816 - 31890769
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgc 331  Q
    |||||||| ||||||||||||||||| ||||||||| |||| ||||||    
T  31890816 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgc 31890769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 6000210 - 6000160
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| ||| |||||| |||||||||||||||||||| |||| |||||||||    
T  6000210 gtccccgtgagtttaactcagttggttaggacaatgcataatatatgcaag 6000160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 13590104 - 13590150
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||||||| || ||||||||||||||| |||||||| ||||||||||    
T  13590104 gtcctcgtgagcttagctcagttggtttggacaatgcataaaatatg 13590150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 29234041 - 29233991
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||||   ||||||| ||||||||||||||    
T  29234041 gtcctcgtgagtttagctcagttggtatagacaatgcataaaatatgcaag 29233991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 40735072 - 40735026
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    ||||||||||||||||||||||| ||  |||||||| ||||||||||    
T  40735072 gtcctcgtaagtttagctcagttagtatggacaatgcataaaatatg 40735026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 49183167 - 49183217
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| ||||||||||||||||| ||||||||  |||| |||||||||    
T  49183167 gtcctcgtgagtttagctcagttggtaaggacaatacataatatatgcaag 49183217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 50040362 - 50040400
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  50040362 ttagctcagttggttgggacaatgcataaaatatgcaag 50040400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 52267758 - 52267808
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| |||||||||| ||||||||| ||||||||||||||    
T  52267758 gtcctcgtgagcttaactcagttggtaaggacaatgcataaaatatgcaag 52267808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 52592494 - 52592444
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| ||||||||||| ||||| |||||||| ||||| |||||||||    
T  52592494 gtcctcgtgagtttagctcaattggtaaggacaatatataatatatgcaag 52592444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 6645245 - 6645208
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  6645245 ttagctcagttggtaaggacaatgcataaaatatgcaa 6645208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 24506979 - 24506930
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| |||||||||||| |   ||||||||||||||||||||||    
T  24506979 tcctcgtaagcttagctcagttgatatagacaatgtataaaatatgcaag 24506930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 52043267 - 52043316
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| |||||||||||||||||  ||| |||| |||||||||||||    
T  52043267 gtcctcgtgagtttagctcagttggtatggataatgcataaaatatgcaa 52043316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 21400092 - 21400040
Alignment:
Q  282 aggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| || ||||||||||||||  |||||||| |||| |||||||||    
T  21400092 aggtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaag 21400040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 30382496 - 30382540
Alignment:
Q  290 gtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||| ||| ||||||||||| |||||||| ||||||||||||||    
T  30382496 gtaagcttaactcagttggtttggacaatgcataaaatatgcaag 30382540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 1514228 - 1514178
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  1514228 gtcctcgtgagcttagctcagttggttaggacaatgtataatatatgcaag 1514178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 21296752 - 21296802
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  21296752 gtcctcgtgagtttagctcagttggttgggacaatgcataaaatatgcaag 21296802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 2108722 - 2108789
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaagtaaggttcgaggtttaaacc 354  Q
    ||||| || ||| ||||||||||  |||||||| |||||||||||||| || |||||||||| |||||    
T  2108722 ctcgtgagcttaactcagttggtatggacaatgcataaaatatgcaagcaatgttcgaggttcaaacc 2108789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 1030277 - 1030323
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    ||||||||||| |||||||| |||||||| |||||| ||||||||||    
T  1030277 gtcctcgtaagcttagctcaattggttagtacaatgcataaaatatg 1030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 9444951 - 9445001
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  | |||||||||||||||||||||    
T  9444951 gtcctcgtgagcttagctcagttggtatgaacaatgtataaaatatgcaag 9445001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 12735310 - 12735260
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| ||||||||||| |||||||| ||||||||||||||    
T  12735310 gtcctcgtgagcttaactcagttggttgggacaatgcataaaatatgcaag 12735260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 17935735 - 17935773
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  17935735 ttagctcagttggtttggacaatgcataaaatatgcaag 17935773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 30579865 - 30579903
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  30579865 ttagctcagttggttgggacaatgcataaaatatgcaag 30579903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 31971523 - 31971573
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||| ||| |||||||||| ||||||||| |||| |||||||||    
T  31971523 gtcctcgtaagcttaactcagttggtaaggacaatgcataatatatgcaag 31971573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 17382079 - 17382128
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||| || ||||||||||||||  ||||||||||||| |||||||||    
T  17382079 tcctcgtgagcttagctcagttggtatggacaatgtataatatatgcaag 17382128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 4494939 - 4494891
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgc 331  Q
    ||||||||| || ||||||||||||||  |||||||| |||||||||||    
T  4494939 ggtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgc 4494891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 5008834 - 5008878
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatat 329  Q
    ||||||||| ||||||||||||||| ||||||||| |||| ||||    
T  5008834 tcctcgtaaatttagctcagttggtaaggacaatgcataatatat 5008878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 18881228 - 18881178
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||||||    
T  18881228 gtcctcgtaagtttagctcagttggttgggataatgcataaaatatgcaag 18881178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 13528990 - 13529040
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||||||||    
T  13528990 gtcctcgtaaggttagctcagttgattaggataatgcataaaatatgcaag 13529040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21482586 - 21482536
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| ||||||||||||||||| |||| ||||||||| |||||||||    
T  21482586 gtcctcgtgagtttagctcagttggtaaggataatgtataatatatgcaag 21482536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 29133551 - 29133501
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||||||||  | |||||| ||||||||||||||    
T  29133551 gtcctcgtaagtttagctcagttggtatgaacaatgcataaaatatgcaag 29133501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 38604019 - 38603981
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38604019 ttagctcagttggttgggacaatgtataaaatatgcaag 38603981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 22267501 - 22267557
Alignment:
Q  278 cattaggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||| ||||||||||||||| ||||||||||  |||||||| |||| |||||||||    
T  22267501 cattatgtcctcgtaagtttaactcagttggtacggacaatgcataatatatgcaag 22267557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 22558970 - 22559021
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||||||| ||||    
T  22558970 ggtcctcgtgagtttaactcagttggtttggacaatgcataaaatatacaag 22559021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 43117254 - 43117207
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||| ||||||||||||||||| ||||||||| |||| |||||||||    
T  43117254 ctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaag 43117207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 3197146 - 3197096
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| |||||||||||||||||  |||||||| |||| |||||||||    
T  3197146 gtcctcgtgagtttagctcagttggtagggacaatgcataatatatgcaag 3197096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 9842269 - 9842219
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  9842269 gtcctcgtgagcttagctcagttggtagggacaatgcataaaatatgcaag 9842219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 12124539 - 12124589
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| ||| ||||||||||||||||| ||||||||| |||| |||||||||    
T  12124539 gtccccgtgagtttagctcagttggtaaggacaatgcataatatatgcaag 12124589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 14925296 - 14925250
Alignment:
Q  287 ctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    ||||||| |||| |||||||||| |||||||||||||| ||||||||    
T  14925296 ctcgtaaatttaactcagttggtaaggacaatgtataatatatgcaa 14925250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 31812972 - 31813022
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||||| || ||| ||||||| |||||||||    
T  31812972 gtcctcgtaagtttaactcagttggtaagaacagtgtataatatatgcaag 31813022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 28771585 - 28771626
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  28771585 agtttagctcagttggtaaggacaatgcataatatatgcaag 28771626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 35685119 - 35685078
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  35685119 agtttagctcagttggtaaggacaatgcataatatatgcaag 35685078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 4137991 - 4138035
Alignment:
Q  290 gtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| ||||||||| ||||| |||||||||||||| |||||||||    
T  4137991 gtaactttagctcaattggtaaggacaatgtataatatatgcaag 4138035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 10109711 - 10109667
Alignment:
Q  286 cctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||||| || ||||||||||||||| |||||||| ||||||||||    
T  10109711 cctcgtgagcttagctcagttggtttggacaatgcataaaatatg 10109667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 12353650 - 12353698
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgca 332  Q
    ||||||||||||||| |||| ||||| ||||||||| |||| |||||||    
T  12353650 gtcctcgtaagtttaactcaattggtaaggacaatgcataatatatgca 12353698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 34464474 - 34464426
Alignment:
Q  286 cctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||| |||||||||||||||||  |||||||| |||| |||||||||    
T  34464474 cctcgtgagtttagctcagttggtatggacaatgcataatatatgcaag 34464426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 47677644 - 47677595
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| |||||||||||||||||||| |||||| |||||||||||||    
T  47677644 gtcctcgtgagtttagctcagttggttagaacaatgcataaaatatgcaa 47677595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 20576477 - 20576427
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||| ||||| |||||||||||||||||||||||    
T  20576477 gtcctcgtgagcttagctcagctggttgggacaatgtataaaatatgcaag 20576427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 35103490 - 35103540
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||| |||||||| ||||||||||||||    
T  35103490 gtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaag 35103540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 18378396 - 18378445
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| || ||||||||||||||| |||||||| |||||||||||||    
T  18378396 gtcctcgtgagcttagctcagttggttgggacaatgcataaaatatgcaa 18378445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 27383733 - 27383773
Alignment:
Q  290 gtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  27383733 gtaaatttagctcagttggtaaggacaatgtataaaatatg 27383773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 45724661 - 45724610
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| || |||| |||| ||||| |||||||||||||||||||||||    
T  45724661 ggtcctcgtgagcttagatcagatggttgggacaatgtataaaatatgcaag 45724610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 3196700 - 3196658
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaagt 335  Q
    ||||||||||||||||| | |||||||||||| ||||||||||    
T  3196700 agtttagctcagttggtaaagacaatgtataatatatgcaagt 3196658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 6023303 - 6023353
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||| ||||||||  |||||||||||||    
T  6023303 gtcctcgtgagcttagctcagttggtttggacaatgcttaaaatatgcaag 6023353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 10025988 - 10026038
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| ||||||||||| |||||||| ||||||||||||||    
T  10025988 gtcctcgtgagcttaactcagttggtttggacaatgcataaaatatgcaag 10026038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 13044197 - 13044159
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  13044197 ttagctcagttggtaaggacaatgcataaaatatgcaag 13044159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 16970990 - 16971036
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||||||| |||| ||||||||||||||| ||||||||||| |||||    
T  16970990 gtcctcgtgagttaagctcagttggttagaacaatgtataatatatg 16971036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 19416508 - 19416558
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  19416508 gtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 19416558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 20205816 - 20205862
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    ||||||||||||||||||||||||||  |||||||| |||| |||||    
T  20205816 gtcctcgtaagtttagctcagttggtatggacaatgcataatatatg 20205862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 30296339 - 30296377
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  30296339 ttagctcagttggtaaggacaatgtataatatatgcaag 30296377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 41029278 - 41029316
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  41029278 ttagctcagttggtaaggacaatgtataatatatgcaag 41029316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 44406911 - 44406873
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  44406911 ttagctcagttggttgggacaatgcataaaatatgcaag 44406873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 46675916 - 46675950
Alignment:
Q  300 ctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| ||||||||||||||||||||||||    
T  46675916 ctcagttggtaaggacaatgtataaaatatgcaag 46675950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 48103741 - 48103691
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| ||||||||||| |||||||| ||||||||||||||    
T  48103741 gtcctcgtgagcttaactcagttggttgggacaatgcataaaatatgcaag 48103691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 17050724 - 17050793
Alignment:
Q  152 ccacttggcataattttattggagaacagttccaacagcacctagggaagtgtttataagttttgtcctt 221  Q
    ||||||| |||  |||||||| | ||||||||||||||||| || |||| ||| |||||||||| |||||    
T  17050724 ccacttgtcatcgttttattgaaaaacagttccaacagcacatatggaactgtgtataagttttctcctt 17050793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 10555404 - 10555360
Alignment:
Q  290 gtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||  | ||||||||||| |||||||||    
T  10555404 gtaagtttagctcagttggtatgaacaatgtataatatatgcaag 10555360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 44558839 - 44558791
Alignment:
Q  286 cctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||| |||||||||||||||||  |||||||| |||| |||||||||    
T  44558839 cctcgtgagtttagctcagttggtatggacaatgcataatatatgcaag 44558791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 43735253 - 43735301
Alignment:
Q  286 cctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  43735253 cctcgtaaacttagctcagttggttaggacaacgtataaaatatgcaag 43735301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 9598433 - 9598483
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||| |||||||||| |||||||||||||||||||||||    
T  9598433 gtcctcgtgagcttagttcagttggttgggacaatgtataaaatatgcaag 9598483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 10926463 - 10926513
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||| |||||||||||||| ||||||||| |||| |||||||||    
T  10926463 gtcctcgtaagcttagctcagttggtaaggacaatgcataatatatgcaag 10926513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 32843329 - 32843279
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||| |||||||| ||||||||||||||    
T  32843329 gtcctcgtgagcttagctcagttggtttggacaatgcataaaatatgcaag 32843279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 8127450 - 8127507
Alignment:
Q  277 tcattaggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||| |||||||| || ||| |||||||||| ||||||||| ||||||||||||||    
T  8127450 tcattatgtcctcgtgagcttaactcagttggtaaggacaatgcataaaatatgcaag 8127507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 47185871 - 47185822
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||| ||||||||||||||||||| | ||||||| |||||||||||||    
T  47185871 gtcctcttaagtttagctcagttggtaaagacaatgcataaaatatgcaa 47185822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 26983365 - 26983413
Alignment:
Q  282 aggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||||||||||||| || |||||||| |||||||||||||||| |||||    
T  26983365 aggtcctcgtaagtataactcagttgattaggacaatgtataatatatg 26983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 1149136 - 1149086
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  1149136 gtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 1149086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 2662086 - 2662136
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||| ||||||||||||||||||| | ||||||| |||| |||||||||    
T  2662086 gtcctcataagtttagctcagttggtaaagacaatgcataatatatgcaag 2662136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 3582776 - 3582826
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||| ||| |||| ||||||||||||||    
T  3582776 gtcctcgtgagattagctcagttggttgggagaatgcataaaatatgcaag 3582826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 8174264 - 8174314
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||||||||||||   |||||| ||||| |||||||||    
T  8174264 gtcctcgtaagtttagctcagttggtagagacaatatataatatatgcaag 8174314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 11124764 - 11124814
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| ||||| |||||||||||| |||||||| ||||| ||||||||    
T  11124764 gtcctcgtgagtttggctcagttggttgggacaatgcataaattatgcaag 11124814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 16980421 - 16980371
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || |||||||||||||| ||||||||| |||| |||||||||    
T  16980421 gtcctcgtgagcttagctcagttggtaaggacaatgcataatatatgcaag 16980371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 21506825 - 21506775
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  21506825 gtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 21506775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 33771684 - 33771734
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| |||||||||| |||||||||||||| |||||||||    
T  33771684 gtcctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaag 33771734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 35863880 - 35863830
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||| |||||||||||||| ||||||||  |||| |||||||||    
T  35863880 gtcctcgtaagcttagctcagttggtaaggacaatacataatatatgcaag 35863830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 44579630 - 44579680
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  44579630 gtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 44579680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 51250300 - 51250250
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||| |||||||||| |||||||||||||| |||||||||    
T  51250300 gtcctcgtgagcttaactcagttggtaaggacaatgtataatatatgcaag 51250250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 7202974 - 7202933
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||||||| | |||||| ||||||||||||||    
T  7202974 agtttagctcagttggttggaacaatgcataaaatatgcaag 7202933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 25340990 - 25340941
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  25340990 tcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 25340941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 28150788 - 28150739
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    ||||||||||| ||||||||||||||  ||||||||  ||||||||||||    
T  28150788 gtcctcgtaagcttagctcagttggtacggacaatgcgtaaaatatgcaa 28150739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 35548354 - 35548305
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| ||||||||||||||||||||  | ||||||||||| |||||||||    
T  35548354 tcctagtaagtttagctcagttggtatgaacaatgtataatatatgcaag 35548305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 39677804 - 39677849
Alignment:
Q  285 tcctcgtaagtttagctcagttggttaggacaatgtataaaatatg 330  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||    
T  39677804 tcctggtaagtttagctcagttggttgggacaatacataaaatatg 39677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 52904210 - 52904161
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| || |||||||||||||| ||||||||| |||| ||||||||    
T  52904210 gtcctcgtgaggttagctcagttggtaaggacaatgcataatatatgcaa 52904161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 54230157 - 54230116
Alignment:
Q  293 agtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  54230157 agtttagctcagttggtaaggacaatgcataatatatgcaag 54230116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 52575943 - 52575991
Alignment:
Q  286 cctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| ||||||||||||||  | |||||| ||||||||||||||    
T  52575943 cctcgtaagcttagctcagttggtatgaacaatgcataaaatatgcaag 52575991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 10824 - 10774
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  10824 gtccccgtgagtttagctcagttggtaaggacaatgcataaaatatgcaag 10774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 239801 - 239850
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaa 333  Q
    |||||||| ||||||||||||||||| ||||||||| |||| ||||||||    
T  239801 gtcctcgtgagtttagctcagttggtaaggacaatgcataatatatgcaa 239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 5405 - 5457
Alignment:
Q  282 aggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| ||||||||||| ||||||  |||||||| ||||||||||||||    
T  5405 aggtcctcgcaagtttagctcggttggtatggacaatgcataaaatatgcaag 5457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 18299 - 18337
Alignment:
Q  296 ttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  18299 ttagctcagttggtaaggacaatgtataatatatgcaag 18337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 63855 - 63901
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatat 329  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||    
T  63855 ggtcctcgtgagtttagctcagttggtagggacaatgtataatatat 63901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Original strand, 71187 - 71233
Alignment:
Q  283 ggtcctcgtaagtttagctcagttggttaggacaatgtataaaatat 329  Q
    ||||||||| |||||||||||||||||  ||||||||||||| ||||    
T  71187 ggtcctcgtgagtttagctcagttggtagggacaatgtataatatat 71233  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 56778 - 56828
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  ||||||||||||| |||||||||    
T  56778 gtcctcgtgagcttagctcagttggtatggacaatgtataatatatgcaag 56828  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 185257 - 185307
Alignment:
Q  284 gtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||| || ||||||||||||||  |||||||| ||||||||||||||    
T  185257 gtcctcgtgagcttagctcagttggtatggacaatgcataaaatatgcaag 185307  T

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Target: scaffold1160 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 1773 - 1729
Alignment:
Q  290 gtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    ||||||||| ||||||||||  |||||||| ||||||||||||||    
T  1773 gtaagtttaactcagttggtagggacaatgcataaaatatgcaag 1729  T

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Target: scaffold0188 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 28182 - 28130
Alignment:
Q  282 aggtcctcgtaagtttagctcagttggttaggacaatgtataaaatatgcaag 334  Q
    |||||||||| |||||||||||||||||  |||||||| ||||  ||||||||    
T  28182 aggtcctcgtgagtttagctcagttggtatggacaatgcataacgtatgcaag 28130  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 365
Target Start/End: Complemental strand, 3636 - 3565
Alignment:
Q  291 taagtttagctcagttggttaggacaatgtataaaatatgcaagtaaggttcgaggtttaaaccacaaccactac 365  Q
    |||| |||| |||||||||| |||||||| ||||||||||||   ||||| || |||| ||||| ||||||||||    
T  3636 taagcttagttcagttggttgggacaatgcataaaatatgca---aaggtccggggttcaaaccccaaccactac 3565  T

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