View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3994_low_7 (Length: 337)
Name: NF3994_low_7
Description: NF3994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3994_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 35762380 - 35762068
Alignment:
| Q |
8 |
gagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagatgct |
107 |
Q |
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| T |
35762380 |
gagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagattct |
35762281 |
T |
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| Q |
108 |
ttgannnnnnnaaccatgtagtctttgattcgttatcggttgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
207 |
Q |
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| T |
35762280 |
ttgatttttttaaccatgtagtctttgattcgttattggctgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
35762181 |
T |
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| Q |
208 |
ttgatgaagatgatacaacaaaatgtgggtttattccaagttaaactgataaacaaaaacccaaatatttagagaaaatgattgggtgatattaaattag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35762180 |
ttgatgaagatgatacaacaaaatgtgggtttattccaagttaaaccgataaacaaaaacccaaatatttagagaaaataattgggtgatattaaattag |
35762081 |
T |
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| Q |
308 |
aaagccctatact |
320 |
Q |
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||||||||||||| |
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| T |
35762080 |
aaagccctatact |
35762068 |
T |
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