View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_1 (Length: 864)
Name: NF3996_high_1
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 53 - 533
Target Start/End: Original strand, 26520590 - 26521068
Alignment:
| Q |
53 |
attgaatgggagaatgtaatgatgaatgttgtttgctatagtttttcctagtgttactcctatactatatgttgatatcacatctcaaaaaattgagggc |
152 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26520590 |
attgaatgggagaatgtaatgatgaatgttgtttggtatagtttttcctagtgttactcctatactat--gttgatatcacatctcaaaaaattgagggc |
26520687 |
T |
|
| Q |
153 |
aagatgtaaatatatgatgttaaacaaaaataagtataggacaacatcataatacatttacattaacataatattatgcagtacaaaatatttggcaact |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||| ||||| |
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| T |
26520688 |
gagatgtaaatatatgatgttaaacaaaaataagtataggacaacatcataatacatttacattaatataatgttatgtagtataaaatatttgacaact |
26520787 |
T |
|
| Q |
253 |
aaatctaaatttgtagtacaaaatgatggaaggagaaggtttgttatccctcacgtgccttctgaagaattggggaacacaaaatgattgtgccggataa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
26520788 |
aaatctaaatttgtagtacaaaatgatggaaggagaaggtttgttatccctcacgtgccttccgaagaattggggaacacaaaatgatggtgccggataa |
26520887 |
T |
|
| Q |
353 |
ggtggaaactaatcagaacaatctcaaattcaaattgatttggaatataagatggagagaaacaaacccctttgaccatgttcatactaaccccacacct |
452 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26520888 |
ggtggaaactaatcagaacaatcccaaatccaaattgatttggaatataagatggagagaaacaaacccctttgaccatgttcatactaaccccacacct |
26520987 |
T |
|
| Q |
453 |
actgaaacgaaagcctttgtcgactctttgtattaaaggtcaacggtgaaaccatgacatcataattcataactcaacccc |
533 |
Q |
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| T |
26520988 |
attgaaacgaaagcctttgtcgactctttgtattaaaggtcaacggtgaaaccatgacatcataattcataactcaacccc |
26521068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 609 - 764
Target Start/End: Original strand, 26521145 - 26521300
Alignment:
| Q |
609 |
ggtatttatagagtcagggcatgtaaataccgtaaatatggtcaataggattatatgaacatgtaaaacgttacaaattgacccaaagtttgatgattag |
708 |
Q |
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|||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
26521145 |
ggtatttacagaatcaggacatgtaaataccgtaaatatagtcaataggattatatgaacatgtaaaacgttccaaattgacccaaagtttgctgattag |
26521244 |
T |
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| Q |
709 |
tcaaacctcgtctgcataacttttttgtggtccacattgcactaatagtttctgtg |
764 |
Q |
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| T |
26521245 |
tcaaacctcgtctgcataacttttttgtggtccacattgcaccgatagtttctgtg |
26521300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 784 - 856
Target Start/End: Original strand, 26523205 - 26523277
Alignment:
| Q |
784 |
aatcttaaccaatgtccacgtatatggtcatggtagaagccactagtagcatagtgaaaaccagccctgtgct |
856 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||| |||| |
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| T |
26523205 |
aatcttaaccaatgtccacgtatatggtcatggttgaagccactagtaaaaaagtgaaaaccagccctttgct |
26523277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 28671763 - 28671691
Alignment:
| Q |
201 |
ataatacatttacattaacataatattatgcagtacaaaatatttggcaactaaatctaaatttgtagtacaa |
273 |
Q |
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|||||||||||||||| | |||| | ||| |||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
28671763 |
ataatacatttacattgagataacacaatgtagtacacaatatttgacaactaaaactaaatttgtagtacaa |
28671691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 32979679 - 32979762
Alignment:
| Q |
199 |
tcataatacatttacattaacataatattatgcagtacaaaatatttggcaactaaatctaaatttgtagtacaaaatgatgga |
282 |
Q |
| |
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||||||||||||| ||||||||||| | |||| |||||||||| | ||||||||| | ||||| ||||| |||| | |||||| |
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| T |
32979679 |
tcataatacatttgcattaacataacactatgtagtacaaaatgtgtggcaactagaattaaatctgtagcacaagaagatgga |
32979762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 40186516 - 40186416
Alignment:
| Q |
203 |
aatacatttacattaacataatattatgcagtacaaaatatttggcaactaaatctaaatttgtagtacaaaatgatggaaggagaaggtttgttatccc |
302 |
Q |
| |
|
|||||||||| |||||||||| | | || ||||||||||||| |||||||||| |||| |||||| |||| | |||||| |||||||| |||| ||||| |
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| T |
40186516 |
aatacatttatattaacataacactgtgtagtacaaaatatt-ggcaactaaaattaaacttgtagcacaagaagatggagggagaaggcttgtcatccc |
40186418 |
T |
|
| Q |
303 |
tc |
304 |
Q |
| |
|
|| |
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|
| T |
40186417 |
tc |
40186416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 17261185 - 17261113
Alignment:
| Q |
200 |
cataatacatttacattaacataatattatgcagtacaaaatatttggcaactaaatctaaatttgtagtacaa |
273 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||| | ||| |||||||| ||| |||||||| |||| |
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| T |
17261185 |
cataatacatttacattaacataacactatgtagtacaaaa-agttgacaactaaaactatatttgtagcacaa |
17261113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 365
Target Start/End: Complemental strand, 17766786 - 17766658
Alignment:
| Q |
239 |
aatatttggcaactaaatctaaatttgtagtacaaaatgatggaaggagaaggtttgttatccctc--acgtgccttctgaagaattggggaacacaaaa |
336 |
Q |
| |
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|||||||| ||||||| |||||||| ||| ||| | |||||||||||||||||||| ||||||| ||| || | |||||||| |||||||||| | |
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| T |
17766786 |
aatatttgataactaaagctaaattttaagtgcaagaagatggaaggagaaggtttgtcatccctctcacgcaccctgcgaagaatttgggaacacaaga |
17766687 |
T |
|
| Q |
337 |
tgattgtgccggataaggtggaaactaat |
365 |
Q |
| |
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|||| | | ||| ||||||||||||||| |
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| T |
17766686 |
tgatggagtaggagaaggtggaaactaat |
17766658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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