View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_18 (Length: 243)
Name: NF3996_high_18
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_18 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 34673308 - 34673079
Alignment:
| Q |
14 |
atatttcacagttatgtcacttcattatattacttcctaaaacatttacacaatgtaacactttttacactgtcaacgtaatgaataaaataacaaaaca |
113 |
Q |
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| T |
34673308 |
atatttcacagttatgtcacttcattatattacttcctaaaacatttacacaatgtaacactttttacactgtcaacgtaatgaataaaataacaaaaca |
34673209 |
T |
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| Q |
114 |
aaaagttggtaataaacagtaggtgaggagagactaaccttcttggcaggaaaaaccgttgcaatagcaaagtagtttcctgcagcaccatcacccaata |
213 |
Q |
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| T |
34673208 |
aaaagttggtaataaacagtaggtgaggagagactaaccttcttggcaggaaaaaccgtcgcaatagcaaagtagtttcctgcagcaccatcacccaatg |
34673109 |
T |
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| Q |
214 |
ccttacaagtttccaatccatagcatttga |
243 |
Q |
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| T |
34673108 |
ccttacaagtttccaatccatagcatttga |
34673079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 34790768 - 34790856
Alignment:
| Q |
146 |
actaaccttcttggcaggaaaaaccgttgcaatagcaaagtagtttcctgcagcaccatcacccaataccttacaagtttccaatccat |
234 |
Q |
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| T |
34790768 |
actaaccttgttagaaggaaaaaccgttgcaatagcaaagtaatttcctgcaacatcatcatccaatgtcttagaagtttccaatccat |
34790856 |
T |
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