View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_2 (Length: 768)
Name: NF3996_high_2
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 474 - 754
Target Start/End: Original strand, 42518916 - 42519196
Alignment:
| Q |
474 |
aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca |
573 |
Q |
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| T |
42518916 |
aaggtgaatagttggtgaagagtgaagatgaataactcagtagcttcagagaacagttttattattgaaagtgatgaagaagatgataaggattttaaca |
42519015 |
T |
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| Q |
574 |
aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta |
673 |
Q |
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| T |
42519016 |
aaggtgatgatggaaatgattctgattcttccaattactcaaatgaaaatccaccacagaggaaacaaagttcttataatccatcatggcctcagagtta |
42519115 |
T |
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| Q |
674 |
caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtctctg |
754 |
Q |
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| T |
42519116 |
caggttaagtccttttttcaatccccctagatttcagtgcacctgtgtgtgtcacttcacgtacctttttgtttgtttctg |
42519196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 42518711 - 42518838
Alignment:
| Q |
261 |
aaactatgcatgcatagctgaaattttatcatagagtttctcagctaaaatattttatatgtaagctttcaaattccaagttcataccatattaccatgc |
360 |
Q |
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| T |
42518711 |
aaactatgcatgcatagctgaaattttatcatagagtttctcagctaaaatattttatatgtaagctttcaaattccaagttca--------aaccatgc |
42518802 |
T |
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| Q |
361 |
agtttgcattttcgataccaattaatccagatccgg |
396 |
Q |
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| T |
42518803 |
agtttgcattttcgataccaattaatccagatccgg |
42518838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 42518508 - 42518545
Alignment:
| Q |
58 |
cttgtgagcgagaaagtaaagtacgtgtacctgcttga |
95 |
Q |
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| T |
42518508 |
cttgtgagcgagaaagtaaagtacgtgtacctgcttga |
42518545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 42518603 - 42518635
Alignment:
| Q |
153 |
aaacaaaaagcacaagtgtcgttcatgctatgg |
185 |
Q |
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| T |
42518603 |
aaacaaaaagcacaagtgtcgttcatgctatgg |
42518635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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