View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_20 (Length: 236)
Name: NF3996_high_20
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15020827 - 15021048
Alignment:
| Q |
1 |
tatgaacagatcagaataaattaaatataatctaactaatcaaaactgtgggcaaattaattgatgtacatatatgatgaaattataagtgcacaaattc |
100 |
Q |
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| T |
15020827 |
tatgaacagatcagaataaattacatataatctaactaatcaaaactgtgggcaaattaattgatgtacatatatgataaaattataagtgcacaaattc |
15020926 |
T |
|
| Q |
101 |
aagtttaattactttcactctaaaatattacagatacatatgaactatctagcagacacagtttgtggttgtgccttttctctttttctttcctttctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020927 |
aagtttaattactttcactctaaaatattacagatacatatgaactatctagcagacacagtttgtggttgtgccttttctctttttctttcctttctaa |
15021026 |
T |
|
| Q |
201 |
gtctaaccttattttccaaaat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15021027 |
gtctaaccttattttccaaaat |
15021048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 49160941 - 49160815
Alignment:
| Q |
100 |
caagtttaattactttcactctaaaatattacagatacatatgaact--atctagcagacacagtttgtggttgtgccttttctctttttc--tttcctt |
195 |
Q |
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|||||||||||||| ||||||||| ||||| | | ||||||||| ||||||| |||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
49160941 |
caagtttaattactccaactctaaaaatttacacacatatatgaactctatctagctgacacaatttgtgcttgtgccttttctctttttctttttcctt |
49160842 |
T |
|
| Q |
196 |
tctaagtctaaccttattttccaaaat |
222 |
Q |
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| |||| |||| || ||||||||||| |
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| T |
49160841 |
tataagcctaattttgttttccaaaat |
49160815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 42273489 - 42273439
Alignment:
| Q |
29 |
aatctaactaatcaaaactgtgggca-aattaattgatgtacatatatgat |
78 |
Q |
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||||||||||||||||| ||| | || |||||||||||||||||||||||| |
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| T |
42273489 |
aatctaactaatcaaaattgtagccacaattaattgatgtacatatatgat |
42273439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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