View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_3 (Length: 504)
Name: NF3996_high_3
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 12507491 - 12507039
Alignment:
| Q |
8 |
gagcacagatcatcaaaacgaaaataaattaaagtacaccttatctcaaattttgacatgacacgttataacttataagaactaggaaacttagatagaa |
107 |
Q |
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| T |
12507491 |
gagcacaaatcatcaaaacgaaaataaa-----gtacaccttatctcaaattttgacatgacacgttataacttataagaactaggaaacttagatagaa |
12507397 |
T |
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| Q |
108 |
gactagaaacaaaggataaaataccatcataatggagattaggtgatgataacatagcagtaatgcaaaatggttgagagaagaaaatatgggctagcag |
207 |
Q |
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| T |
12507396 |
gactagaaacaaaggataaa-taccatcataatggaaattaggtgatgataatatcgcagtaatgcaaaatggttgagagaagaaaatatgggctagcag |
12507298 |
T |
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| Q |
208 |
cattagtagttggcatgctttaattaatagttgaaaggtaaccaataaattgatgctaattaatgcagttgtggactcttgatagggacgattttctgct |
307 |
Q |
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| T |
12507297 |
cattagtagttggcatgctttaattaatagttgaaaggtaaccaataaattgatgctaattaatgcagttgtggactcttgatagggacgattttgtgct |
12507198 |
T |
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| Q |
308 |
ctttcaaaaataatcgacctatactatat-aaatacccatatgccttaatcaataggcaacttacaagatttttcctcacaatctttaatgtgatggttn |
406 |
Q |
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| T |
12507197 |
ctttcaaaaataatcgacctatactatataaaatacacatatgccttaatcaataggcaacttacaagatttttcctcacaatctttaatgtgatggtta |
12507098 |
T |
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| Q |
407 |
nnnnnnnttcttacgatcctatcaatatcagatttaatgtctcactttatgttgtgttt |
465 |
Q |
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| T |
12507097 |
aaaaaaattcttacgatcctatcgatatcagatttaatgtctcactttatgttgtgttt |
12507039 |
T |
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