View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_high_6 (Length: 465)
Name: NF3996_high_6
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Original strand, 30349813 - 30350246
Alignment:
| Q |
18 |
gtaaccatctccattgccaacaatactactattgtggcggctaagtagttctttatgcagctcaagatcatcatcatgaataagaataatgctggatcct |
117 |
Q |
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| T |
30349813 |
gtaaccatctccattgccaacaatactactattgtggcggctaagtagttctttatgcagctcaagatcatcatcatgaataagaataatgctggatcct |
30349912 |
T |
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| Q |
118 |
tctacctggaagctggaatggatggtacgctgagcccaagcccgagcatatacgatgccaggaataaacaatgggaggatgaggagaagaacagttccac |
217 |
Q |
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| T |
30349913 |
tctacctggaagctggaatggatggtacgctgagcccaagcccgagcatatacgatgccaggaataaacaatgggaggatgaggagaagaacagttccac |
30350012 |
T |
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| Q |
218 |
caaagtggagccgggctgaagccatggaggaagcagatgagccaaacaaaaggagataaaggccagtgaagatggctaagaagttcaagattagaaatac |
317 |
Q |
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| T |
30350013 |
caaagtggagccgggctgaagccatggaggaagcagatgagccaaacaaaaggagataaaggccagtgaagatggctaagaagttcaagattagaaatac |
30350112 |
T |
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| Q |
318 |
tagcgagtcccggttaactgcatcaggagggagagggtctaaaggcggttggcgaagaattggaatggtcgctgcaatgcaaacaaaaagaggaacaaga |
417 |
Q |
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| T |
30350113 |
tagcgagtcccggttaactgcatcaggagggagagggtctaaaggtggttggcgaagaattggaatggtcgctgcaatgcaaacaaaaagaggaacaaga |
30350212 |
T |
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| Q |
418 |
gcattcaaaagaagatacaacgagtcaggtgatg |
451 |
Q |
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| T |
30350213 |
gcattcaaaagaagatacaacgagtcaggtgatg |
30350246 |
T |
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