View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_11 (Length: 335)
Name: NF3996_low_11
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 38320126 - 38320238
Alignment:
| Q |
205 |
agctgcgtatactaatacttcgaatcgagaaaaactgtaatggataactatattcgaaccaacaacctcttgtccaaatgggaagagatattttatttta |
304 |
Q |
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| T |
38320126 |
agctgcgtatactaataattcgaatcgagaaaaactgtaatggataactatattcgaaccaacaacctcttgtccaaatacgaagtgatattttatttta |
38320225 |
T |
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| Q |
305 |
ctacataatttat |
317 |
Q |
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|| || |||||| |
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| T |
38320226 |
ttatatcatttat |
38320238 |
T |
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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38320023 - 38320122
Alignment:
| Q |
1 |
gacgcgttttatttaaacgattga--tattttatgtgaattaaaatcannnnnnncaaacgatcattattaatgtgttaataacattctagtaattttat |
98 |
Q |
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| T |
38320023 |
gacgcgttttacttaaacgattgacatattttatgtgaactaaaaccacttttttcaaacaatcattattaatgtgttaataacattctagtaactttat |
38320122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 10980931 - 10980867
Alignment:
| Q |
94 |
tttattgagatgtctgattgtattgaacttattattgctaatgaaatgggatagttatttattgt |
158 |
Q |
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| T |
10980931 |
tttactgagatgcctgattgtattgaacctattattgctaatgaaatgatatagttatttattgt |
10980867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 34698702 - 34698744
Alignment:
| Q |
116 |
ttgaacttattattgctaatgaaatgggatagttatttattgt |
158 |
Q |
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| T |
34698702 |
ttgaacctattattgctaatgaaatgatatagttatttattgt |
34698744 |
T |
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