View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3996_low_12 (Length: 332)

Name: NF3996_low_12
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3996_low_12
NF3996_low_12
[»] chr2 (25 HSPs)
chr2 (9-312)||(10372190-10372493)
chr2 (17-279)||(10348119-10348381)
chr2 (36-286)||(10353468-10353727)
chr2 (25-184)||(9321312-9321471)
chr2 (210-280)||(9283720-9283790)
chr2 (210-282)||(9275051-9275123)
chr2 (17-182)||(9292259-9292421)
chr2 (125-286)||(9329035-9329205)
chr2 (29-176)||(9283833-9283980)
chr2 (120-182)||(9357614-9357676)
chr2 (214-278)||(8573037-8573101)
chr2 (212-284)||(10336367-10336439)
chr2 (211-279)||(12005658-12005726)
chr2 (120-183)||(10336275-10336338)
chr2 (210-284)||(9316558-9316632)
chr2 (210-279)||(9292458-9292527)
chr2 (17-182)||(9060772-9060937)
chr2 (224-280)||(8579032-8579088)
chr2 (232-279)||(11987021-11987068)
chr2 (234-277)||(16269456-16269499)
chr2 (210-284)||(9357710-9357784)
chr2 (210-279)||(9060666-9060735)
chr2 (125-178)||(9274948-9275001)
chr2 (244-280)||(7115182-7115218)
chr2 (211-287)||(9321507-9321583)
[»] chr4 (2 HSPs)
chr4 (36-184)||(26575220-26575368)
chr4 (218-286)||(26575411-26575479)
[»] scaffold0667 (1 HSPs)
scaffold0667 (24-284)||(4818-5081)
[»] chr3 (2 HSPs)
chr3 (36-184)||(37462845-37462993)
chr3 (223-284)||(37463041-37463102)
[»] chr8 (1 HSPs)
chr8 (211-282)||(41966251-41966322)
[»] chr1 (1 HSPs)
chr1 (120-181)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 312
Target Start/End: Original strand, 10372190 - 10372493
Alignment:
Q  9 gataatactgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372190 gataatactgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtg 10372289  T
Q  109 gtcgattaagtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggaggctttgattgtggggtcaaga 208  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  10372290 gtcgattaagtaagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcataaggaggctctgattgtggggtcaaga 10372389  T
Q  209 ataggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372390 ataggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcga 10372489  T
Q  309 attt 312  Q
    ||||    
T  10372490 attt 10372493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 10348119 - 10348381
Alignment:
Q  17 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 116  Q
    |||||| |||||||||||| ||||||||||||||| ||||| | |||  ||||||||||||  || |||||||||||||||| | | ||  | |||| ||    
T  10348119 tgaagatcgtacggcatagcaggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagta 10348218  T
Q  117 agtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggaggctttgattgt-ggggtcaagaataggaa 215  Q
    ||| ||| |||||||||||||||||||| |||||||    ||||||||||||||| ||||| |||||||||  |||| | || |  || |||||||||||    
T  10348219 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagcatttg-tcgtcgtagttaagaataggaa 10348317  T
Q  216 taggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 279  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||    
T  10348318 taggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttc 10348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 10353468 - 10353727
Alignment:
Q  36 taggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggag 135  Q
    |||||||||  ||||| ||||| | |||  ||||||||||||  ||||||||||||||||||| | ||||  | ||||  |||| ||| |||||||||||    
T  10353468 taggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggag 10353567  T
Q  136 tttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggaggctttgattgtggggtca------agaa---taggaataggaagaggg 226  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| || |   | | | |  ||||      ||||   |||| ||||||||||||    
T  10353568 tttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgttagggataggaagaggg 10353667  T
Q  227 agaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgggg 286  Q
    ||||||||||||| || ||| ||||||||||| |||||||| | ||||||||| ||||||    
T  10353668 agaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggg 10353727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 9321312 - 9321471
Alignment:
Q  25 gtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagat 124  Q
    |||||||||| | |||||||| ||||||||||| | | | |||||||||||||  ||||||| ||||||||||| | | ||  |   |  |||  ||||     
T  9321312 gtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagag 9321411  T
Q  125 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataag 184  Q
    ||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  9321412 attctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataag 9321471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 9283790 - 9283720
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttca 280  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||    
T  9283790 tagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttca 9283720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 9275051 - 9275123
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcatt 282  Q
    |||| ||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||| ||||||||    
T  9275051 taggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatt 9275123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 9292259 - 9292421
Alignment:
Q  17 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 116  Q
    |||||| ||||||||||| ||||||| || ||||||||||||| |||||||||||||||||  || ||||||||   ||||| |   ||  |||||  ||    
T  9292259 tgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtctcacctgtggatc---aaaagagtaatgtaggtcggcta 9292355  T
Q  117 agtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 182  Q
       |||| ||||||||||||||||||||||||| ||| | |||| |||||||||| ||||| ||||    
T  9292356 tccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 286
Target Start/End: Original strand, 9329035 - 9329205
Alignment:
Q  125 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggag--gctttgattgt----ggggtcaagaa---taggaa 215  Q
    |||||||||||||||||||| |||||||||| |||||||||||| || ||||| |||||||||  ||  ||  |||     |  |||||||   |||| |    
T  9329035 attctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatgttaggga 9329134  T
Q  216 taggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgggg 286  Q
    ||| |||||| || ||||||||||  | |||||||||||||||||||||||||| ||||||||| ||||||    
T  9329135 tagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttgggg 9329205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 9283980 - 9283833
Alignment:
Q  29 ggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagatattc 128  Q
    |||||| |||||||||| ||||||||||| | |||||||||||||||||   |||||| || |||||||| | ||||  |    | ||   |||| ||||    
T  9283980 ggcataataggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattc 9283881  T
Q  129 tgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaa 176  Q
     |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  9283880 ggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 9283833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 9357614 - 9357676
Alignment:
Q  120 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 182  Q
    |||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||    
T  9357614 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 8573101 - 8573037
Alignment:
Q  214 aataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgattt 278  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||||||||| || |||||    
T  8573101 aataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgattt 8573037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 10336367 - 10336439
Alignment:
Q  212 ggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgg 284  Q
    |||||||||||||||||| ||||||||| || |||||||||| || |||| || ||||||| |||||||||||    
T  10336367 ggaataggaagagggagataagggataatccgatgtttacggatggtaggattacagaatgcgatttcattgg 10336439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 12005726 - 12005658
Alignment:
Q  211 aggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 279  Q
    ||||||||||| |||||||  |||||||| || |||||||||| |||||||||||||||| ||||||||    
T  12005726 aggaataggaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttc 12005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 10336275 - 10336338
Alignment:
Q  120 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataa 183  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||| || ||||| |||||    
T  10336275 aagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa 10336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 9316558 - 9316632
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgg 284  Q
    |||| |||| |||||| || ||||||||||  | |||||||||||||||||||||||||| ||||||||| ||||    
T  9316558 tagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttgg 9316632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 9292458 - 9292527
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 279  Q
    |||| |||| |||||||||||||||||||| || ||||||| | |||||||||||| ||| |||||||||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttc 9292527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 9060937 - 9060772
Alignment:
Q  17 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 116  Q
    |||||| ||||||||||| | |||||| | ||||||||||| | |||  |||| ||||| |  ||||||| |||||||||| || ||||  |  | | ||    
T  9060937 tgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaata 9060838  T
Q  117 agtaagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacata 182  Q
    |  |||  ||||||||||||||||||||| |||  || | ||||||||||||||| ||||| ||||    
T  9060837 accaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 8579088 - 8579032
Alignment:
Q  224 gggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttca 280  Q
    |||||| |||||||||| | |||||||||| |||||||||||||||| | |||||||    
T  8579088 gggagataagggataactcgatgtttacggatgttagggttccagaaagcgatttca 8579032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 11987068 - 11987021
Alignment:
Q  232 agggataaccctatgtttacgggtgttagggttccagaatgtgatttc 279  Q
    |||||||| || ||||||||||||||||||||||||||| | ||||||    
T  11987068 agggataatccgatgtttacgggtgttagggttccagaaagcgatttc 11987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 16269456 - 16269499
Alignment:
Q  234 ggataaccctatgtttacgggtgttagggttccagaatgtgatt 277  Q
    |||||| || |||||||| |||||||||||||||||||||||||    
T  16269456 ggataatccaatgtttacaggtgttagggttccagaatgtgatt 16269499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 9357710 - 9357784
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgg 284  Q
    |||| |||||||||||||| ||||||||||    |||||||||| ||||| ||||||||| || |||||| ||||    
T  9357710 tagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttgg 9357784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 9060735 - 9060666
Alignment:
Q  210 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 279  Q
    |||| ||||||||||||| |||||||||   || || ||| ||||||||||||||||||| |||| ||||    
T  9060735 tagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttc 9060666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 9274948 - 9275001
Alignment:
Q  125 attctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaaca 178  Q
    |||||||| ||||| |||||||||||||||| ||||||||| || || ||||||    
T  9274948 attctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaaca 9275001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 7115218 - 7115182
Alignment:
Q  244 atgtttacgggtgttagggttccagaatgtgatttca 280  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  7115218 atgtttacgggtgttagtgttccagattgtgatttca 7115182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 9321507 - 9321583
Alignment:
Q  211 aggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggt 287  Q
    ||| ||||||||||| || |||||||| |  | ||| ||||| ||| |||||||||||| ||||||||| |||||||    
T  9321507 agggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggt 9321583  T

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Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 26575220 - 26575368
Alignment:
Q  36 taggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggag 135  Q
    |||||||||| ||||| ||||| | |||  |||||||||||| |||||||||||||||||||| | ||||  | ||||  |||||||| |||||||||||    
T  26575220 taggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggag 26575319  T
Q  136 tttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataag 184  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26575320 tttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataag 26575368  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 26575411 - 26575479
Alignment:
Q  218 ggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgggg 286  Q
    |||||||||||||||||||||| || || ||||| ||||| ||||||||||| || |||||| ||||||    
T  26575411 ggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggg 26575479  T

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Target: scaffold0667 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 4818 - 5081
Alignment:
Q  24 cgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaaga 123  Q
    |||||||||||||||||||||| ||||||||||| | |||  |||| ||||||| |||||||||||||||||||| | ||||  |   || |||  ||||    
T  4818 cgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaaga 4917  T
Q  124 tattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataaggaggctttgattgtggggtcaagaa----taggaatagg 219  Q
     | |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||||||||   || | ||| || |  ||||     || ||||||    
T  4918 gagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttca-tgtcggatggagaacgaggagtaatagg 5016  T
Q  220 aagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgg 284  Q
     |||||||||||||||||||    |||||||||| ||||||||||||||| ||||||||| ||||    
T  5017 tagagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttgg 5081  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 37462845 - 37462993
Alignment:
Q  36 taggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagatattctgaggag 135  Q
    |||||| ||| ||||||||||| | |||||||||||||||||  ||||||||||||||||||| | ||||  | ||||  |   |||| |||||||||||    
T  37462845 taggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggag 37462944  T
Q  136 tttgtaatcgccggataaagaatcaaaaccgaagccatgaacacataag 184  Q
    |||||||||||||| ||||||||||||||||||||| ||||| ||||||    
T  37462945 tttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataag 37462993  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 37463041 - 37463102
Alignment:
Q  223 agggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattgg 284  Q
    ||||||||||||||||| |  ||||||||| |||||||||||||||| ||||||||| ||||    
T  37463041 agggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttgg 37463102  T

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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 41966322 - 41966251
Alignment:
Q  211 aggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcatt 282  Q
    ||||||||||| ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||    
T  41966322 aggaataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatt 41966251  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 29453012 - 29452951
Alignment:
Q  120 aagatattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccatgaacacat 181  Q
    |||| ||||||||||||||||||||| ||  ||| | ||||||||| ||||| |||||||||    
T  29453012 aagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaacacat 29452951  T

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