View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3996_low_13 (Length: 302)
Name: NF3996_low_13
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_13 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 37742663 - 37742880
Alignment:
| Q |
16 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcactaaattgattggcaatactg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37742663 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcactaaattgattggcaatactg |
37742762 |
T |
|
| Q |
116 |
gactttgatcactttaataatgttatcgttttatttcgtgataaatgaacttatatgataattatgc-nnnnnnnnattgaagaagtccatcaaataaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
37742763 |
gactttgatcactttaataatgttatcgttttatttcgtgataaatgaacttatatgataatcatgctttttttttgttgaagaagtccatcaaataaat |
37742862 |
T |
|
| Q |
215 |
gtaaaatctaaaggatgt |
232 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37742863 |
gtaaaatctaaaggatgt |
37742880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 162
Target Start/End: Complemental strand, 37752055 - 37751909
Alignment:
| Q |
16 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcactaaattgattggcaatactg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
37752055 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcaccaaattgattggcaccactg |
37751956 |
T |
|
| Q |
116 |
gactttgatcactttaataatgttatcgttttatttcgtgataaatg |
162 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37751955 |
gactttgatcactttaatagtgttatcgttttatttcatgataaatg |
37751909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 37749733 - 37749840
Alignment:
| Q |
16 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcactaaattgattggcaatactg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37749733 |
ggaaaaactcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcactaaattgattggcaatactg |
37749832 |
T |
|
| Q |
116 |
gactttga |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
37749833 |
gactttga |
37749840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 37733134 - 37733081
Alignment:
| Q |
36 |
gtcttgtgttagagttcttattggaggttggatggctatggctattacttttgg |
89 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||| ||||| |
|
|
| T |
37733134 |
gtcttgtgttagagtggtggttggaggttggatggctatggctattacctttgg |
37733081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 29554510 - 29554478
Alignment:
| Q |
201 |
tccatcaaataaatgtaaaatctaaaggatgtt |
233 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
29554510 |
tccatcaaataaatgtaaaatctaaacgatgtt |
29554478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 290
Target Start/End: Complemental strand, 34482518 - 34482420
Alignment:
| Q |
194 |
gaagaagtccatcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcac--ttgcgatcaggttcacgaatatttgtttgctgtgtttagtat |
290 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||||||| | |||| ||| |||||||||||| || | |||||||||||| |
|
|
| T |
34482518 |
gaagcagtccatcaaataaatgtgaaatctaaaggatgttatgctggcaagtcacattcgcgagcagcttcacgaatattacttcgatgtgtttagtat |
34482420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 41249152 - 41249188
Alignment:
| Q |
203 |
catcaaataaatgtaaaatctaaaggatgttatgctg |
239 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41249152 |
catcaaataaatgtaaaatctaagggatgttatgctg |
41249188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 90019 - 89948
Alignment:
| Q |
204 |
atcaaataaatgtaaaatctaaaggatgttatgctgtcaagtcacttgcgatcaggttcacgaatatttgtt |
275 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| ||| || |||| | ||||||||||||||| |||| |
|
|
| T |
90019 |
atcaaataaatgtaaaatctaaggtatgttatgctaccaacacatttgctaccaggttcacgaatatgtgtt |
89948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University