View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_14 (Length: 302)
Name: NF3996_low_14
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 38226437 - 38226704
Alignment:
| Q |
14 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
113 |
Q |
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| T |
38226437 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
38226536 |
T |
|
| Q |
114 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226537 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactac |
38226636 |
T |
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| Q |
214 |
aagtaaggattctctgcagtcgacagactttacatacacgcaataagcacattaatgactgttggatc |
281 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226637 |
aagtaaggattctctgcagtctacagactttacatacacgcaataagcacattaatgactgttggatc |
38226704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 38214063 - 38214242
Alignment:
| Q |
19 |
acatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
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| T |
38214063 |
acatagccaccagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaa |
38214162 |
T |
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| Q |
119 |
tctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgag |
199 |
Q |
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| T |
38214163 |
cctgaaacaaa-aaatccatgttgctcactaaacacccaacaaagtaatggactagttttgtgttttagagttaaattgag |
38214242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 38237963 - 38238120
Alignment:
| Q |
1 |
tgaggagcagcacagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaag |
100 |
Q |
| |
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|||| |||| || |||||| ||||||||||||||| | ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| ||||| |
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| T |
38237963 |
tgagcagcaccatagatcatatagccaccagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaag |
38238062 |
T |
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| Q |
101 |
attcaacttgatactcagtctgaaacaaataaattcatgttgctcactatatacccaa |
158 |
Q |
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| T |
38238063 |
attcaacttgatactcattctgaaacaaagaaaaccatgttgctcactatatacccaa |
38238120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 38242951 - 38243099
Alignment:
| Q |
14 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
113 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| |||||| || |||||||||||| |||||||||||||||||| |
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| T |
38242951 |
agatcacatatccaccagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgata |
38243050 |
T |
|
| Q |
114 |
ctcagtctgaaacaaataaattcatgttgctcactat-atacccaacaa |
161 |
Q |
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|||| ||||||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
38243051 |
ctcaatctgaaacaaagaaatccatgttgctcactatgatacccaacaa |
38243099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 38253304 - 38253470
Alignment:
| Q |
14 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || |||| |||||| ||||||| || || || ||| ||| |||||||| ||||| ||| |
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| T |
38253304 |
agatcacatagccaccggtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcata |
38253403 |
T |
|
| Q |
114 |
ctcagtctgaaacaaataaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
180 |
Q |
| |
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|||| |||||||||| |||| ||||||||| | |||||||||||| |||||||||||| |||| |
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| T |
38253404 |
ctcaacctgaaacaaagaaatctatgttgctcgcattatacccaacaacttaatggactagtgttat |
38253470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 38220096 - 38220226
Alignment:
| Q |
14 |
agatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgata |
113 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| |||||||||||||| |
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| T |
38220096 |
agatcacataaccaccagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgata |
38220195 |
T |
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| Q |
114 |
ctcagtctgaaacaaataaattcatgttgct |
144 |
Q |
| |
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|||| |||||||||| |||| ||| ||||| |
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| T |
38220196 |
ctcaacctgaaacaaagaaatccatattgct |
38220226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 38248165 - 38248316
Alignment:
| Q |
28 |
ccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaaca |
127 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||| ||||||| || | || ||||||| |||||||||||| ||||||||| |||||||| |
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| T |
38248165 |
ccagattgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaaca |
38248263 |
T |
|
| Q |
128 |
aataaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
180 |
Q |
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|| |||| | ||||||| | ||||||| |||||| || ||||||||| |||| |
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| T |
38248264 |
aagaaatctacgttgctcgcaatatacctaacaaactactggactagtgttat |
38248316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 17454527 - 17454708
Alignment:
| Q |
8 |
cagcacagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaac |
107 |
Q |
| |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || | ||||||||||| |||||||||||| |
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| T |
17454527 |
cagcatagatcacatagccaccagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaac |
17454626 |
T |
|
| Q |
108 |
ttgatactcagtctgaaacaaataaattcatgttgctcacta----tatacccaacaaagtaatggactagttttatgtttt |
185 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| |||| ||| | ||||||||| |
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| T |
17454627 |
ttgatactcaatctgaaacaaagaaattcatgttgctcactataattatacccaacaaagaaatgaactgttgttatgtttt |
17454708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 17433448 - 17433600
Alignment:
| Q |
8 |
cagcacagatcacatagccaccagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaac |
107 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||| ||| |||||||||||| |
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| T |
17433448 |
cagcatagatcacatatccaccagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaac |
17433547 |
T |
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| Q |
108 |
ttgatactcagtctgaaacaaataaattcatgttgctcactat-atacccaac |
159 |
Q |
| |
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|||||||||| ||||||||||| |||| ||||||||||||||| ||||||||| |
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|
| T |
17433548 |
ttgatactcaatctgaaacaaagaaatccatgttgctcactataatacccaac |
17433600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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