View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_16 (Length: 257)
Name: NF3996_low_16
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 41491007 - 41491230
Alignment:
| Q |
15 |
cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41491007 |
cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg |
41491106 |
T |
|
| Q |
115 |
atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattattgaatagtgctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41491107 |
atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattgttgaatagtgctg |
41491206 |
T |
|
| Q |
215 |
tgcttaatgctgctgtgttaactc |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
41491207 |
tgcttaatgctgctgtgttaactc |
41491230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 23858631 - 23858854
Alignment:
| Q |
15 |
cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg |
114 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| || |
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| T |
23858631 |
cataggcatagcaagatcaaaatgaggacgaggagggttacaccaaccaccattatcacttgcttgagcaaaattaggaggacaaaagttagtagcagta |
23858730 |
T |
|
| Q |
115 |
atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattattgaatagtgctg |
214 |
Q |
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| T |
23858731 |
atgaaaattgaaggactcccagaatgacaccactctttgtcatttgcacactttatctcaaaacaagcaccacagcttaaaccattgttgaacaaagcag |
23858830 |
T |
|
| Q |
215 |
tgcttaatgctgctgtgttaactc |
238 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
23858831 |
tgcttaatgctgctgtgttcactc |
23858854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 238
Target Start/End: Original strand, 22313997 - 22314220
Alignment:
| Q |
15 |
cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg |
114 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||| ||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||| || || ||| |
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| T |
22313997 |
cataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtg |
22314096 |
T |
|
| Q |
115 |
atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattattgaatagtgctg |
214 |
Q |
| |
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|| || || || ||| | |||| || |||||| | || | ||||||| | ||||||||| | |||||||||| ||||| ||||||||||||| |
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| T |
22314097 |
atcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctg |
22314196 |
T |
|
| Q |
215 |
tgcttaatgctgctgtgttaactc |
238 |
Q |
| |
|
|||||| |||||||||||| |||| |
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| T |
22314197 |
tgcttagtgctgctgtgtttactc |
22314220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 45506886 - 45506957
Alignment:
| Q |
30 |
atcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaa |
101 |
Q |
| |
|
|||||||||||| | ||| || ||||||||||||||||||||| |||| | |||||||| || |||||||| |
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| T |
45506886 |
atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaa |
45506957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 45512346 - 45512417
Alignment:
| Q |
30 |
atcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaa |
101 |
Q |
| |
|
|||||||||||| | ||| || ||||||||||||||||||||| |||| | |||||||| || |||||||| |
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| T |
45512346 |
atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaa |
45512417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 3745138 - 3745085
Alignment:
| Q |
174 |
aaaacaagaaccacaacttagtccattattgaatagtgctgtgcttaatgctgc |
227 |
Q |
| |
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|||||| | ||||||| | ||||||||||||||||| |||||||||| |||||| |
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| T |
3745138 |
aaaacatgcaccacaagtaagtccattattgaatagagctgtgcttagtgctgc |
3745085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 34207657 - 34207875
Alignment:
| Q |
15 |
cataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagtagctgtg |
114 |
Q |
| |
|
||||||||| |||||||||||||| || || ||||||||||||||||| ||||| ||||| | ||||||||| || || |||||||| || ||||| || |
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| T |
34207657 |
cataggcatagcaagatcaaagtgtggtcgtggagggttacaccaacctccattatcacttgcttgagcaaaatttggtggacaaaaatttgtagcagtt |
34207756 |
T |
|
| Q |
115 |
atgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaaacaagaaccacaacttagtccattattgaatagtgctg |
214 |
Q |
| |
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| || || ||||| || |||| ||| ||||| ||||| | |||||| || |||||||| || |||||||| | || || ||||||||||||| |
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| T |
34207757 |
actaatattgaaggacttccagggtggcaccaactaggatcattggaacactttaactcaaaacacgagccacaactcaaaccgttgttgaatagtgctg |
34207856 |
T |
|
| Q |
215 |
tgcttaatgctgctgtgtt |
233 |
Q |
| |
|
||||||||||||||||||| |
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| T |
34207857 |
tgcttaatgctgctgtgtt |
34207875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 38165331 - 38165269
Alignment:
| Q |
45 |
aggagggttacaccaaccaccattgtcactaggttgagcaaagttaggaggacaaaagttagt |
107 |
Q |
| |
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|||||| |||||||||||||||||||||||||| |||||||||| || |||||||| ||||| |
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| T |
38165331 |
aggaggattacaccaaccaccattgtcactaggaagagcaaagtttgggggacaaaaattagt |
38165269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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