View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_17 (Length: 250)
Name: NF3996_low_17
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 5574934 - 5574825
Alignment:
| Q |
131 |
ttaatttcgtcccactgaggcttggaacctactcactgcaataaggtcatataatgatatacatatagttcaggcttcactaaaccatggcttactgtaa |
230 |
Q |
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| T |
5574934 |
ttaatttcgtcccactgaggcttggaacctactcactgcaataaggtcatatgatgatatacatatagttcaggcttcactaaaccatggcttactgtaa |
5574835 |
T |
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| Q |
231 |
tggtcctttg |
240 |
Q |
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| T |
5574834 |
tggtcctttg |
5574825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 171
Target Start/End: Complemental strand, 5585923 - 5585799
Alignment:
| Q |
42 |
tccttgttgcctatcaaggttgattggagggtgtattcctgatgaaaggtcttgcattgctataatagtattgattatgtattttgggattaatttcgtc |
141 |
Q |
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| T |
5585923 |
tccttgttgcaaaacaaggttgattggagggtgtattcctgatgaaag-----gccatgctataataggggagagtatgtgttttgggatgaattccata |
5585829 |
T |
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| Q |
142 |
ccactgaggcttggaacctactcactgcaa |
171 |
Q |
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| T |
5585828 |
ccactgaggcttggaacctagtcactgcaa |
5585799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 5572486 - 5572359
Alignment:
| Q |
32 |
tttcaactgttccttgttgcctatcaaggttgattggagggtgtattcctgatgaaaggtcttgcattgctataatagtattgattatgtattttgggat |
131 |
Q |
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| T |
5572486 |
tttcaaatgctccttgttgtccatcaaggttgaatggattgtgtattcctgatgaaag-----gccatgctataataggagtgactatgtgttttgggat |
5572392 |
T |
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| Q |
132 |
taatttcgtcccactgaggcttggaacctactc |
164 |
Q |
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| T |
5572391 |
gaagtccatcccaccgaggcttggtacctactc |
5572359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 5581846 - 5581757
Alignment:
| Q |
99 |
tgctataatagtattgattatgtattttgggattaatttcgtcccactgaggcttggaacctactcactgcaataaggtcatataatgat |
188 |
Q |
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| T |
5581846 |
tgctataataggagtgattattttttttgggatgaagtccatcccactgaggcatataaccaactcactgcaacaaggtcttattatgat |
5581757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 5580105 - 5580033
Alignment:
| Q |
99 |
tgctataatagtattgattatgtattttgggattaatttcgtcccactgaggcttggaacctactcactgcaa |
171 |
Q |
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| T |
5580105 |
tgctataataggagtgaatatgtgtcttgggatgcagttcatcccactgaggcttggagcctactcattgcaa |
5580033 |
T |
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