View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_21 (Length: 235)
Name: NF3996_low_21
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_21 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 47713799 - 47713584
Alignment:
| Q |
15 |
atttctttcacaactgaatgataaaagtctagaagctttgtttcaacaaattttagtttagtcaacaaataacttcaaccacggaaaattaattcattga |
114 |
Q |
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| T |
47713799 |
atttctttcacaactgaatgataaaagtctaaaagctttgtttcaacaaattttagt-----caacaaataacttcaaccacggaaaattaattcattga |
47713705 |
T |
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| Q |
115 |
ccgactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaa |
214 |
Q |
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| T |
47713704 |
ccgactttcatatccaaagcttcaatcatccactacttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaa |
47713605 |
T |
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| Q |
215 |
gctattattttccttttactc |
235 |
Q |
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| T |
47713604 |
gctattattttccttttactc |
47713584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 47746285 - 47746167
Alignment:
| Q |
117 |
gactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagc |
216 |
Q |
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| T |
47746285 |
gactttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagc |
47746186 |
T |
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| Q |
217 |
tattattttccttttactc |
235 |
Q |
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| T |
47746185 |
tattattttccctttactc |
47746167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 47718493 - 47718378
Alignment:
| Q |
117 |
gactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagc |
216 |
Q |
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| T |
47718493 |
gactttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagc |
47718394 |
T |
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| Q |
217 |
tattattttcctttta |
232 |
Q |
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| T |
47718393 |
tattattttcctttta |
47718378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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