View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_22 (Length: 218)
Name: NF3996_low_22
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 12750887 - 12750706
Alignment:
| Q |
17 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
116 |
Q |
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| T |
12750887 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
12750788 |
T |
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| Q |
117 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctctgagacggttggttgtggaacagatt |
198 |
Q |
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| T |
12750787 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctgtgagacggttggttgtggaacagatt |
12750706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 12813851 - 12813670
Alignment:
| Q |
17 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813851 |
agaaaatatggcatattaaataaacttaacactttgctatcacattttaaacttaccattaccatttacaatcatatcacattagtaaacttccttgtgt |
12813752 |
T |
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| Q |
117 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctctgagacggttggttgtggaacagatt |
198 |
Q |
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| T |
12813751 |
gattattattgcaatgcaggttgtgccacacaagaaaattgtaatgggttgtcctgtgagacggttggttgtggaacagatt |
12813670 |
T |
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