View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3996_low_23 (Length: 205)
Name: NF3996_low_23
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 37532177 - 37532349
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532177 |
gtccaaccactccaaatttctcaaatgacttaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37532276 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532277 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
37532349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 37638823 - 37638995
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638823 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctatgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37638922 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37638923 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
37638995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37593281 - 37593452
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593281 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37593380 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37593381 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagcagtcaatatc |
37593452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37822981 - 37823152
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37822981 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37823080 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37823081 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagcagtcaatatc |
37823152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37710584 - 37710755
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37710584 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacttgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37710683 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37710684 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagcagtcaatatc |
37710755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 37402081 - 37401910
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37402081 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattatttgaaagattaagtcctttgagagaatttaattct |
37401982 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37401981 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagcagtcaatatc |
37401910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37695672 - 37695843
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695672 |
gtccaaccactccaattttctcaaatgacccaaagattgtggaatactacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
37695771 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37695772 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagcagtcaatatc |
37695843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37701763 - 37701934
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
37701763 |
gtccaaccactccaagtttcttagattactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttaagagaatataattct |
37701862 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37701863 |
ccaatgacttgtggaattctaccttcaaacatgttatttgataaatcaatagttgtgaaagtcgtcaatatc |
37701934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 37434791 - 37434959
Alignment:
| Q |
20 |
aaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaa |
119 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37434791 |
aaccactccaaatgtctcaatttactcaaagattgtggaatggtacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattctccaa |
37434890 |
T |
|
| Q |
120 |
tgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
188 |
Q |
| |
|
||||| | ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37434891 |
tgactagaggaatttttccttcaaacaagttatttgataaatcaatagttgtgaaagtagtcaatatct |
37434959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 37393969 - 37393798
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
37393969 |
gtccaaccactctaaatttctcaaatgacttaaagattgtggaatggttcctgtgattccattgtttgagaggttaaggcctttgagagaatttaattct |
37393870 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||||||||| || |||||| || |||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37393869 |
ccaatgacttctgaaatttctccatcaaacttgttatttgataaatcaatagttgtaaaagtagtcaatatc |
37393798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 37428132 - 37428300
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
37428132 |
gtccaaccactccaagtttctcagattactcaaagattgtggaatgctacctgtgattccattgtttgaaa---taagacctttgagagaattcaattct |
37428228 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||| |||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
37428229 |
ccaacgacttgaggaatttctccttcaaacatgttatttgacaaatcaatagttgtgaaagttgtcaatatc |
37428300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 37383405 - 37383237
Alignment:
| Q |
20 |
aaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattctccaa |
119 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| |
|
|
| T |
37383405 |
aaccactctagatttctcaaactactcaaagaataaggaattgtacctgtgattttattgtttgaaaggttaaggcctttgagagaaatcaattctccaa |
37383306 |
T |
|
| Q |
120 |
tgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatct |
188 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
37383305 |
agacttgtggaatttctccttcaaacatgttatttgataaatcaatagttgtgaacgtggtcaatatct |
37383237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 37440147 - 37440238
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaat |
107 |
Q |
| |
|
|||| ||||||| ||||||||||| | ||||||||||||||||||| ||| | |||||||||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
37440147 |
gtccgaccactctaaatttctcaatttactcaaagattgtggaatggtacttttgattccattttttaagaggttaaggcctttaagagaat |
37440238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 26437463 - 26437564
Alignment:
| Q |
82 |
tgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtc |
181 |
Q |
| |
|
|||||| ||||||||| |||| || || || |||||||||| | |||||| || |||||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
26437463 |
tgaaagattaagtcctatgagtgacttcaactctccaatgattattggaatctctccttcaaatttattctttgataaatcaagagttgtgaaagtagtc |
26437562 |
T |
|
| Q |
182 |
aa |
183 |
Q |
| |
|
|| |
|
|
| T |
26437563 |
aa |
26437564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 26450832 - 26450933
Alignment:
| Q |
82 |
tgaaaggttaagtcctttgagagaatttaattctccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtc |
181 |
Q |
| |
|
|||||||||||||||| |||| || || || |||||||||| |||||| || |||||||| | || ||||||||||||| |||||||||||||||| |
|
|
| T |
26450832 |
tgaaaggttaagtcctatgagtgacttcaactctccaatgatcgttggaatctctccttcaaatttattgtttgataaatcaagagttgtgaaagtagtc |
26450931 |
T |
|
| Q |
182 |
aa |
183 |
Q |
| |
|
|| |
|
|
| T |
26450932 |
aa |
26450933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 16844079 - 16843908
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
16844079 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacccgtgattccattttttgaaaggttaagtccaatgagagaatataactct |
16843980 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843979 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
16843908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 16846746 - 16846575
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16846746 |
gtccaaccactccaaatgtctcaatttactcaaagattgtggaatggtacctgtgattctattgtttgaaaggttaagacctttgagagaatttaattct |
16846647 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16846646 |
ccaatgacctctggaatttttccttcaaacatgttatttgataaatcaatagttgtgaaaatagtcaatatc |
16846575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 24218814 - 24218643
Alignment:
| Q |
16 |
gtccaaccactccaaatttctcaaatgactcaaagattgtggaatgctacctgtgattccattgtttgaaaggttaagtcctttgagagaatttaattct |
115 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
24218814 |
gtccaaccactccaaatttcgcaaattactcaaagattgtggaatggtacctatgatttgattgtgtgaaaggttaaggcctttgagaaaatttaatttc |
24218715 |
T |
|
| Q |
116 |
ccaatgacttgtggaatttcaccttcaaacatgttatttgataaatcaatagttgtgaaagtagtcaatatc |
187 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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|
| T |
24218714 |
ccaatgacttgtggaatttctccttcaaacatgttattcgataaatcaatcgttgtgaaagtagtcagtatc |
24218643 |
T |
|
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