View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_4 (Length: 492)
Name: NF3996_low_4
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 302 - 480
Target Start/End: Complemental strand, 38319728 - 38319550
Alignment:
| Q |
302 |
gcacaaccaaatcttccttcctccaatggccgatcaactcaccgacgagcagatctctgagttcaaggaagctttcagcctattcgataaggatggcgat |
401 |
Q |
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| T |
38319728 |
gcacaaccaaatcttccttcctccaatggccgatcaactcaccgacgagcagatctctgagttcaaggaagctttcagcctattcgataaggatggcgat |
38319629 |
T |
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| Q |
402 |
ggtatcgtttttctcagatccttttannnnnnncttagatctgaatttttattgaagtgttattgtttttctcgatttt |
480 |
Q |
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| T |
38319628 |
ggtatcgtttttctcagatccttttatttttttcttagatctgaatttttattgaagtgttattgtttttctcgatttt |
38319550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 38320039 - 38319797
Alignment:
| Q |
1 |
tttaaataaaacgcgtcgcacagggatgaccgattcacacaaaacaatatcaatatcactataaa----------gattgacacatt-aagtatgatggt |
89 |
Q |
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| T |
38320039 |
tttaagtaaaacgcgtcgtacaaagatgaccgattcacacaaaacaatatcactataataaaaaatggtgttagggattgacacatttaagtatgatggt |
38319940 |
T |
|
| Q |
90 |
ctgaaatagatgtgattaaggtaatgagaagatgattaagatttaattaaggtatataaaattccacaaaaagaagagaaagagaatagccatagaaaaa |
189 |
Q |
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| T |
38319939 |
ctgaaatagatgcgattaaggtaatgagaagatgattaaaatttaattaaggtatataaaattccacaaaaagaa-agaaagagaatagccatagaaaaa |
38319841 |
T |
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| Q |
190 |
caagtactaaaataagactatagtatataaataccttaatcctc |
233 |
Q |
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| T |
38319840 |
aaagaactaaaataagactatagtatataaataccttaatcctc |
38319797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 8928150 - 8928072
Alignment:
| Q |
327 |
atggccgatcaactcaccgacgagcagatctctgagttcaaggaagctttcagcctattcgataaggatggcgatggta |
405 |
Q |
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| T |
8928150 |
atggcagatcaactcacagacgatcagatctctgagttcaaggaagctttcagcttattcgacaaggatggcgatggta |
8928072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 420
Target Start/End: Complemental strand, 14014978 - 14014880
Alignment:
| Q |
320 |
tcctccaatggccgatcaactcaccgacgagcagatctctgagttcaaggaagctttcagcctattcgataaggatggcgatggtatcgtttttctcaga |
419 |
Q |
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| T |
14014978 |
tcctccaatggccgaccagctcactgatgatcagatcgccgagttcaaggaggccttcagcctcttcgataaggatggcgatggtctc--ttttctcaga |
14014881 |
T |
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