View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_5 (Length: 465)
Name: NF3996_low_5
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 30383518 - 30383960
Alignment:
| Q |
18 |
caaatatgatccaagtgaatcaaaaagggtggaatagtaatgcaatgaaccaacaaaacggtccaaaaatgaccctccaatgttaacatcttgttctact |
117 |
Q |
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| T |
30383518 |
caaatatgatccaagtgaatcaaaaagggtggaatagtaatgcaatgaaccaacaaaacggtccaaaaatgaccctccaatgttaacatcttgttctact |
30383617 |
T |
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| Q |
118 |
aaagttatgatttttggttccaattcttcaagaagtctcaaagttttccaatcaggtccagttgaatcatacaaagaatgttgcaaccaatgaactgcaa |
217 |
Q |
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| T |
30383618 |
aaagttatgatttttggttccaattcttcaagaagtctcaaagttttccaatcaggtccagttgaatcatacaaagaatgttgcaaccaatgaactgcaa |
30383717 |
T |
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| Q |
218 |
gtgcttcattaggcctaatttgtaacatggaaacatcaacaacttcaccaaatttacatgctatagggtaaaactccaaacacaaaccaagccttctagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30383718 |
gtgcttcattaggcctaatttgtaacatggaaacatcaacaacttcaccaaatttacatgctatagggtaaaactctaaacacaaaccaagccttctagc |
30383817 |
T |
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| Q |
318 |
gaaattcgaaagatttttccccgtctcaacaagaagttccatcgatgctcccatccccgtcattcgaactgaaggcctaccctccattcgagttgcgagt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30383818 |
gaaattcgaaagatttttccccgtctcaacaagaagttccatcgatgctcccatccccgtcattcgaactgaaggcctaccctccattcgagtcgcgagt |
30383917 |
T |
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| Q |
418 |
atgtgnnnnnnngcaggccattgcagaccttg-atgatgtcca |
459 |
Q |
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| T |
30383918 |
atgtgaaaaaaagcaggccattgcagaccttgcatgatgtcca |
30383960 |
T |
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