View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_7 (Length: 448)
Name: NF3996_low_7
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 75 - 440
Target Start/End: Complemental strand, 35648467 - 35648099
Alignment:
| Q |
75 |
agttccacaaaaccaatcatgtgaacacaataatgcttcagcattatccagcaaaagaatacttctatatttatcaagtatctgtccagctatagtgaat |
174 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35648467 |
agttccacaaagccaatcatgtgaacacaataatgcttcagcattatccggcaaaagaatacttctatatttatcaagtatctgtccacctatagtgaat |
35648368 |
T |
|
| Q |
175 |
ga-----ctgattctactgtagtaatcgagatgctcaaaatatcatgtgccatattaaaaacttcagattatttatcctcattcgctttccaatattcaa |
269 |
Q |
| |
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|| || || | |||||||||||| ||||||||||||||||||||| || ||| ||||||||| |||||| |||||||| ||||| ||||||||| |
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| T |
35648367 |
gaggactctaatgccactgtagtaatcaagatgctcaaaatatcatgtgtcaccttagaaacttcaggctatttaccctcattcactttc-aatattcaa |
35648269 |
T |
|
| Q |
270 |
gaacatctaagttaacatattgattacgatcaagtctctcctcatccaaataagtttgcaaatcagtctcttttcttgaaggttcacacaatttactttg |
369 |
Q |
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|||||| ||||||| || |||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
35648268 |
gaacatataagttagcaaattgattatgatcaagtctctcctcatctaaataagcttgcaaatcag-ctcttttattgaaggttcacacaatttactttg |
35648170 |
T |
|
| Q |
370 |
ataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccagacctttctgatgatg |
440 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
35648169 |
ataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccatacctttgtgaagatg |
35648099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 35648510 - 35648470
Alignment:
| Q |
17 |
ataatgcatcttacattgctccctatttcaaatagcaagtt |
57 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
35648510 |
ataatgcattttacattgctcccaatttcaaatagcaagtt |
35648470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 440
Target Start/End: Original strand, 10366987 - 10367378
Alignment:
| Q |
54 |
agttggtagataataactaggagttccacaaaaccaatcatgtgaacacaataatgcttcagcattatccagcaaaagaatacttctatatttatcaagt |
153 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||| ||||||||||||||| ||| |
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|
| T |
10366987 |
agttgatagatactaaccaggagttccacaaagccaatcatgtgagcacaataatgcttcaacattttctggcaaaagaacacttctatatttatctagt |
10367086 |
T |
|
| Q |
154 |
atctgtccagctatagtgaatga-----ctgattctactgtagtaatcgagatgctcaaaatatcatgtgccatattaaaaacttcagattatttatcct |
248 |
Q |
| |
|
||| ||||| ||||| ||||||| ||||| | ||||| ||||| | |||||||| |||||| ||||||| ||| ||||||||| |||||| | | |
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| T |
10367087 |
atccgtccacctatactgaatgaggactctgatgccactgttgtaataggaatgctcaagatatcacgtgccatcttagaaacttcagggtatttacctt |
10367186 |
T |
|
| Q |
249 |
cattcgctttccaatattcaagaacatctaagttaacatattgattacgatcaagtctctcctcatccaaataagtttgcaaatcagtctcttttcttga |
348 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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|
| T |
10367187 |
cattcactttccaatattcaagaacatctaagttggcatattgattatgatcaagtctctcttcatccaaataagtttgtaaatcagtctcttttctgga |
10367286 |
T |
|
| Q |
349 |
aggttcacacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccagacctttctgatgatg |
440 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |
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|
| T |
10367287 |
aggtccgcacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattggactacctctaacagacctttgtgaagatg |
10367378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 440
Target Start/End: Original strand, 38479288 - 38479679
Alignment:
| Q |
54 |
agttggtagataataactaggagttccacaaaaccaatcatgtgaacacaataatgcttcagcattatccagcaaaagaatacttctatatttatcaagt |
153 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||| ||||||||||||||| ||| |
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|
| T |
38479288 |
agttgatagatactaaccaggagttccacaaagccaatcatgtgagcacaataatgcttcaacattttctggcaaaagaacacttctatatttatctagt |
38479387 |
T |
|
| Q |
154 |
atctgtccagctatagtgaatga-----ctgattctactgtagtaatcgagatgctcaaaatatcatgtgccatattaaaaacttcagattatttatcct |
248 |
Q |
| |
|
||| ||||| ||||| ||||||| ||||| | ||||| ||||| | |||||||| |||||| ||||||| ||| ||||||||| |||||| | | |
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|
| T |
38479388 |
atccgtccacctatactgaatgaggactctgatgccactgttgtaataggaatgctcaagatatcacgtgccatcttagaaacttcagggtatttacctt |
38479487 |
T |
|
| Q |
249 |
cattcgctttccaatattcaagaacatctaagttaacatattgattacgatcaagtctctcctcatccaaataagtttgcaaatcagtctcttttcttga |
348 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
38479488 |
cattcactttccaatattcaagaacatctaagttggcatattgattatgatcaagtctctcttcatccaaataagtttgtaaatcagtctcttttctgga |
38479587 |
T |
|
| Q |
349 |
aggttcacacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccagacctttctgatgatg |
440 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |
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|
| T |
38479588 |
aggtccgcacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattggactacctctaacagacctttgtgaagatg |
38479679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 54 - 440
Target Start/End: Complemental strand, 30818192 - 30817801
Alignment:
| Q |
54 |
agttggtagataataactaggagttccacaaaaccaatcatgtgaacacaataatgcttcagcattatccagcaaaagaatacttctatatttatcaagt |
153 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||| ||||||||||||||| ||| |
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|
| T |
30818192 |
agttgatagatactaaccaggagttccacaaagccaatcatgtgagcacaataatgcttcaacattttctggcaaaagaacacttctatatttatctagt |
30818093 |
T |
|
| Q |
154 |
atctgtccagctatagtgaatga-----ctgattctactgtagtaatcgagatgctcaaaatatcatgtgccatattaaaaacttcagattatttatcct |
248 |
Q |
| |
|
||| ||||| ||||| ||||||| ||||| | ||||| ||||| | |||||||| |||||| ||||||| ||| ||||||||| |||||| | | |
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|
| T |
30818092 |
atccgtccacctatactgaatgaggactctgatgccactgttgtaataggaatgctcaagatatcacgtgccatcttagaaacttcagggtatttacctt |
30817993 |
T |
|
| Q |
249 |
cattcgctttccaatattcaagaacatctaagttaacatattgattacgatcaagtctctcctcatccaaataagtttgcaaatcagtctcttttcttga |
348 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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|
| T |
30817992 |
cattcactttccaatattcaagaacatctaagttggcatattgattatgatcaagtctctcttcatccaaataagtttgtaaatcagtctcttttctgga |
30817893 |
T |
|
| Q |
349 |
aggttcacacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccagacctttctgatgatg |
440 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |
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|
| T |
30817892 |
aggtccgcacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattggactacctctatcagacctttgtgaagatg |
30817801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 54 - 440
Target Start/End: Original strand, 46241701 - 46242093
Alignment:
| Q |
54 |
agttggtagataataactaggagttccacaaaaccaatcatgtgaacacaataatgcttcagcattatccag-caaaagaatacttctatatttatcaag |
152 |
Q |
| |
|
||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||||||||| |||| || | |||||||| ||||||||||||||| || |
|
|
| T |
46241701 |
agttgatagatactaaccaggagttccacaaagccaatcatgtgagcacaataatgcttcaacattttctgggcaaaagaacacttctatatttatctag |
46241800 |
T |
|
| Q |
153 |
tatctgtccagctatagtgaatga-----ctgattctactgtagtaatcgagatgctcaaaatatcatgtgccatattaaaaacttcagattatttatcc |
247 |
Q |
| |
|
|||| ||||| ||||| ||||||| ||||| | ||||| ||||| | |||||||| |||||| ||||||| ||| ||||||||| |||||| | |
|
|
| T |
46241801 |
tatccgtccacctatactgaatgaggactctgatgccactgttgtaataggaatgctcaagatatcacgtgccatcttagaaacttcagggtatttacct |
46241900 |
T |
|
| Q |
248 |
tcattcgctttccaatattcaagaacatctaagttaacatattgattacgatcaagtctctcctcatccaaataagtttgcaaatcagtctcttttcttg |
347 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
46241901 |
tcattcactttccaatattcaagaacatctaagttggcatattgattatgatcaagtctctcttcatccaaataagtttgtaaatcagtctcttttctgg |
46242000 |
T |
|
| Q |
348 |
aaggttcacacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattagactatctctaccagacctttctgatgatg |
440 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||| |
|
|
| T |
46242001 |
aaggtccgcacaatttactttgataattactaaaatcttctaattcacttgaaggaatgattggactacctctatcagacctttgtgaagatg |
46242093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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