View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_8 (Length: 430)
Name: NF3996_low_8
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 190 - 348
Target Start/End: Complemental strand, 2571608 - 2571450
Alignment:
| Q |
190 |
atgaaaaggagaagggaaagtgaaggtgacatgnnnnnnnggaagtataatgaaaggtggtttgagtatgtgttattttgcttgtgggatgtgtttagga |
289 |
Q |
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| T |
2571608 |
atgaaaaggagaagggaaagtgaaggtgacatgtttttttggaagtttaatgaaaggtggtttgagtatgtgttattttgcttgtgggatgtgtttagga |
2571509 |
T |
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| Q |
290 |
ataatggtagtactaggaatttataggcacatagacgaagttgttgagataaataaata |
348 |
Q |
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| T |
2571508 |
ataatggtagtactaggaatttataggcacatagacgaagttgttgagataaataaata |
2571450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 2571781 - 2571685
Alignment:
| Q |
17 |
agaattttccatagttatatggatctgatggtgatgaacgaattgcggatagcatcgagcgacatagtttcggatacaatgtcgttttgcacgcggc |
113 |
Q |
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| T |
2571781 |
agaattttccatagttatatggatctgatggtgatgaacgaattgcggatagcattgagcgacatagtttcggatacaatgtcgttttgcacgcggc |
2571685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 2571256 - 2571199
Alignment:
| Q |
352 |
cctatctctaaatagtttatttggaaaataacattgtcactcttcaatgtgttattaa |
409 |
Q |
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| T |
2571256 |
cctatctctaaatagtttatttgaaaaataacattgtcagtcttcaatgtgttattaa |
2571199 |
T |
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