View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3996_low_9 (Length: 427)
Name: NF3996_low_9
Description: NF3996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3996_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 2578603 - 2578990
Alignment:
| Q |
18 |
ttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctgtattgcgaaaa |
117 |
Q |
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| T |
2578603 |
ttgatatgcatcaatgtgacacttataataaaccgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctgtattgcgaaaa |
2578702 |
T |
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| Q |
118 |
cccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaagaaaacaaaaatgaaaagattcccaagttattcaaaactgttgtttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578703 |
cccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaagaaaacaaaaatgaaaagattcccaagttattcaaaactgttgtttc |
2578802 |
T |
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| Q |
218 |
cataagatctctaaaatagtctcaaaagcacttataccaatagatattctccaagccgggtcttactagccagtgtccccggtcactgattaatgactcc |
317 |
Q |
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| T |
2578803 |
cataagatctctaaaatagtctcaaaagcacttataccaatagatattctccaagccgggtcttactacccagtgtctccggtcactgat---------- |
2578892 |
T |
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| Q |
318 |
tctaatgactcctcaaatagaaattttatctagaataaagtaataattacactagccttttat-aaaaacttatatgtttcagttgcttaatctgtgctc |
416 |
Q |
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| T |
2578893 |
--taatgactcctcaaatagaaattttatcttgaat--agtaataattacactaactttttataaaaaacttatctgttttagttgcttaatcactgctc |
2578988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 33950200 - 33950335
Alignment:
| Q |
73 |
agtgctactgcttggtgcttttgtggacctgctgtattgcgaaaacccatgtctcttgctatgaaattccttccaaacacagctatttgcaccccaaaga |
172 |
Q |
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| T |
33950200 |
agtgttactgtttggtgcatttgcggac-tactgtattgcaaaaactcatgtctgtagctatgaaattccttccaaacacaacaatt--aacccccaaga |
33950296 |
T |
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| Q |
173 |
aaacaaaaatgaaaagattcccaagttattcaaaactgtt |
212 |
Q |
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| T |
33950297 |
aaacaaaaatgaaaaaattcacaagtta-tcaaaactgtt |
33950335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 16605686 - 16605548
Alignment:
| Q |
18 |
ttgatatgcatcaatgtgacacttataataaactgcttgatcagcacttgtcattagtgctactgcttggtgcttttgtggacctgctgtattgcgaaaa |
117 |
Q |
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|||||||||||| ||| ||| || || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| || ||| |
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| T |
16605686 |
ttgatatgcatccatggaacatttgtagaaaactgcttgatctgcacttgtcattagtgctactgcttggtgtttttgtggaccggctgtgttcttaaag |
16605587 |
T |
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| Q |
118 |
cccatgtctcttgctatgaaattccttccaaacacagct |
156 |
Q |
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| T |
16605586 |
cctatgtctctggcaatgaaatttctcccaaacacagct |
16605548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 9833103 - 9833054
Alignment:
| Q |
214 |
tttccataagatctctaaaatagtctcaaaagcacttataccaatagata |
263 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||| |||||||||| |
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| T |
9833103 |
tttccataagatctctcaaatagtctcataagtacttacgccaatagata |
9833054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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