View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3997_high_3 (Length: 323)
Name: NF3997_high_3
Description: NF3997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3997_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 24490522 - 24490232
Alignment:
| Q |
18 |
gaaatttccatgcacatgttattttctcttgactatcgacatatgcatattatagcacctg--actttattaaagacgtacgagtctatctatataaatc |
115 |
Q |
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| T |
24490522 |
gaaatttccatgcacatgttattttctcttgactatcgacatat------tatagcaactgtgactttattaaagatgtacgagtccat----ataaatc |
24490433 |
T |
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| Q |
116 |
aagtaatttcacagtaatatctacaaattaaagcatcatatcaaaatatcttaatacaatatatcctctccactctctattctaggctaaaatgcattca |
215 |
Q |
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| T |
24490432 |
aagtaatttcacagtaatatttacaaattaaagcatcatatcaaaatatcttaatacaatatatcctctctactctctattctaggctaaaatgcattca |
24490333 |
T |
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| Q |
216 |
gaaatgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaactaaagtataatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
24490332 |
gaaatgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaacaaaagtacaatc |
24490233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 24469079 - 24468977
Alignment:
| Q |
214 |
cagaaatgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaactaaagtataa |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||| || |
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| T |
24469079 |
cagaaatgtattttgcaaccacaatgctcattctctttttaacatacatttctataagcttaatttcactcattggtagaaccaaaaaacaaaagtacaa |
24468980 |
T |
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| Q |
314 |
tct |
316 |
Q |
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||| |
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| T |
24468979 |
tct |
24468977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 31151335 - 31151434
Alignment:
| Q |
217 |
aaatgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaactaaagtataatct |
316 |
Q |
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||||||||||||||| |||||||||| | || | ||||||||||| |||||| ||| |||||||||||| |||||||||||||| ||| || ||||| |
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| T |
31151335 |
aaatgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttctttcactcattggtagaaccaaaaaacaaaattacaatct |
31151434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 31137703 - 31137604
Alignment:
| Q |
217 |
aaatgtattttgcaaccacaatgctcattctatttttaacatacattgctataagcttactttcactcattcttagaaccaaaaaactaaagtataatct |
316 |
Q |
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| T |
31137703 |
aaatgtattttgcaatcacaatgctcctcctcctattaacatacatatctataaactttatttccctcattggtagaaccaaaaaacaaaattacaatct |
31137604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 31127623 - 31127667
Alignment:
| Q |
21 |
atttccatgcacatgttattttctcttgactatcgacatatgcat |
65 |
Q |
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||||| ||||||||||| | | ||||||||||||||||||||||| |
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| T |
31127623 |
atttctatgcacatgttttctgctcttgactatcgacatatgcat |
31127667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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