View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3997_high_5 (Length: 248)
Name: NF3997_high_5
Description: NF3997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3997_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21268337 - 21268111
Alignment:
| Q |
1 |
ttaagggtataagtagtgggaagaagaaacgatcatgcttgctgcgcgtatttgttgtgttgtgtggaaagaaagaaaggaattattggacccactttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21268337 |
ttaagggtataagtagtgggaagaagaaacgatcatgcttgctgcgcgtatttgttgtgttgtgtggaaagaaagaaaggaattattggacccactttct |
21268238 |
T |
|
| Q |
101 |
catgg-ttcaaaagtacc-ttttgttgagtattttaattaagtcattaattagttagttaattaacaacttaatttgttgggtttatggttttattatat |
198 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21268237 |
catggcttcaaaagtacctttttcttgagtattttaattaagtcattaattagttagttaattaacaacttaatttgttgggtttatggttttattctat |
21268138 |
T |
|
| Q |
199 |
tgatttgaccaaaagtgtatgaaactt |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21268137 |
tgatttgaccaaaagtgtatgaaactt |
21268111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University