View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3997_low_1 (Length: 373)
Name: NF3997_low_1
Description: NF3997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3997_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 47181151 - 47181406
Alignment:
| Q |
6 |
agcagcacagaacaaggttggccatcacacttataaaaatgagatctaatatctataattatctcaaatataattatcttgaattttattttgtttttac |
105 |
Q |
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| T |
47181151 |
agcaacacaaaacaaggttggccatcacacttataaaaatgagatctaatatctataattatctcaaatataattatcttgaattttattttgtttttac |
47181250 |
T |
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| Q |
106 |
gtcaaccttttagtccctgcaaattactaaacatgttattaagtcctttttagagactnnnnnnntatgtaatttattagttctactgaattttattgtc |
205 |
Q |
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| T |
47181251 |
gtcaaccttttagtccctgcaaattactaaacatattattaagtcctttttagagact-aaaaaatatgtaatttattagttctactgaattttattgtc |
47181349 |
T |
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| Q |
206 |
tttacgtcaactttctagttcctacaaattactaaactacgcaagtttttattagag |
262 |
Q |
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| T |
47181350 |
tttacgtcaactttctagttcctacaaattactaaactacacaagtttttattagag |
47181406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 47182889 - 47182985
Alignment:
| Q |
259 |
agagtattgaaactagaaacaagttttttattcacctaagaatttctcattatgaaataggaattgaaaggtagttaaaagagactagaaacaaaaa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47182889 |
agagtattgaaactagaaacaagttttttattcacctaagaatttctcattatcaaataggaattgaaaagtagttaaaagagactagaaacaaaaa |
47182985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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