View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3998_high_1 (Length: 1119)

Name: NF3998_high_1
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3998_high_1
NF3998_high_1
[»] chr6 (15 HSPs)
chr6 (625-1119)||(31043462-31043952)
chr6 (146-238)||(31043986-31044078)
chr6 (929-1116)||(31108752-31108926)
chr6 (106-147)||(8319805-8319846)
chr6 (106-146)||(8315267-8315307)
chr6 (68-115)||(17096130-17096177)
chr6 (37-111)||(27574597-27574681)
chr6 (106-146)||(27535334-27535374)
chr6 (1-76)||(27552014-27552100)
chr6 (106-147)||(27574506-27574547)
chr6 (68-115)||(8315358-8315406)
chr6 (68-115)||(8319897-8319945)
chr6 (106-146)||(17096075-17096115)
chr6 (237-303)||(31056298-31056363)
chr6 (37-75)||(17780128-17780166)
[»] chr1 (6 HSPs)
chr1 (735-957)||(13696550-13696772)
chr1 (1-112)||(16588336-16588468)
chr1 (40-115)||(26316216-26316291)
chr1 (106-147)||(39794210-39794251)
chr1 (106-146)||(39796814-39796854)
chr1 (68-122)||(26311763-26311818)
[»] chr8 (15 HSPs)
chr8 (1-115)||(28644729-28644863)
chr8 (68-122)||(30410177-30410232)
chr8 (106-147)||(30410104-30410145)
chr8 (68-115)||(30405675-30405723)
chr8 (106-147)||(201985-202027)
chr8 (106-147)||(316822-316864)
chr8 (106-147)||(43811784-43811826)
chr8 (106-146)||(197468-197509)
chr8 (106-146)||(312305-312346)
chr8 (106-146)||(30405585-30405625)
chr8 (1-45)||(30405766-30405810)
chr8 (1-45)||(30410275-30410319)
chr8 (68-115)||(38757243-38757291)
chr8 (106-145)||(43807213-43807253)
chr8 (106-147)||(38757354-38757396)
[»] chr7 (15 HSPs)
chr7 (106-149)||(27761727-27761770)
chr7 (106-147)||(27757212-27757253)
chr7 (1-121)||(47419426-47419568)
chr7 (106-146)||(22901533-22901573)
chr7 (106-146)||(47419376-47419416)
chr7 (68-115)||(7939937-7939986)
chr7 (106-147)||(7944384-7944426)
chr7 (68-115)||(7944490-7944539)
chr7 (68-115)||(22901410-22901459)
chr7 (68-115)||(27757101-27757150)
chr7 (106-146)||(7939808-7939849)
chr7 (1-45)||(22901323-22901366)
chr7 (1-45)||(27757013-27757057)
chr7 (1-45)||(27761564-27761608)
chr7 (68-115)||(27761652-27761701)
[»] chr2 (10 HSPs)
chr2 (1-115)||(6463295-6463428)
chr2 (106-146)||(8055722-8055762)
chr2 (107-147)||(6463227-6463267)
chr2 (68-116)||(8055646-8055696)
chr2 (68-116)||(36670758-36670808)
chr2 (68-116)||(36675306-36675356)
chr2 (68-115)||(8051093-8051142)
chr2 (106-147)||(8051206-8051248)
chr2 (106-147)||(36670865-36670907)
chr2 (106-146)||(36675413-36675454)
[»] chr4 (9 HSPs)
chr4 (106-147)||(44147374-44147415)
chr4 (106-147)||(44151885-44151926)
chr4 (97-146)||(53722329-53722378)
chr4 (68-115)||(31670344-31670392)
chr4 (68-115)||(3771096-3771145)
chr4 (68-118)||(53722261-53722311)
chr4 (106-146)||(3771262-3771303)
chr4 (71-115)||(44147277-44147323)
chr4 (71-115)||(44151812-44151858)
[»] chr5 (22 HSPs)
chr5 (68-111)||(40371609-40371652)
chr5 (1-76)||(30695460-30695545)
chr5 (106-147)||(40371548-40371589)
chr5 (106-146)||(40367386-40367426)
chr5 (106-147)||(7103675-7103717)
chr5 (68-115)||(12018987-12019036)
chr5 (106-147)||(12019103-12019145)
chr5 (68-115)||(12023556-12023605)
chr5 (106-147)||(12023686-12023728)
chr5 (106-147)||(16794483-16794525)
chr5 (68-114)||(30695548-30695594)
chr5 (106-146)||(7099107-7099148)
chr5 (106-146)||(16799026-16799067)
chr5 (106-146)||(37682359-37682400)
chr5 (37-104)||(40367478-40367555)
chr5 (68-115)||(7099228-7099277)
chr5 (68-115)||(7103797-7103846)
chr5 (68-115)||(16794363-16794412)
chr5 (68-115)||(16798924-16798973)
chr5 (1-61)||(19502476-19502533)
chr5 (106-147)||(30695610-30695652)
chr5 (106-147)||(37659041-37659083)
[»] scaffold0202 (1 HSPs)
scaffold0202 (223-305)||(6457-6539)
[»] scaffold0440 (2 HSPs)
scaffold0440 (106-147)||(7862-7903)
scaffold0440 (69-115)||(7763-7811)
[»] scaffold0044 (4 HSPs)
scaffold0044 (68-115)||(44719-44768)
scaffold0044 (106-147)||(49166-49208)
scaffold0044 (106-146)||(44587-44628)
scaffold0044 (68-115)||(49299-49348)
[»] chr3 (8 HSPs)
chr3 (68-115)||(21847365-21847414)
chr3 (68-115)||(21850455-21850504)
chr3 (106-147)||(54167065-54167107)
chr3 (106-147)||(54171645-54171687)
chr3 (1-45)||(21847278-21847322)
chr3 (1-45)||(21850368-21850412)
chr3 (106-147)||(21847442-21847484)
chr3 (106-146)||(21850532-21850573)


Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 625 - 1119
Target Start/End: Complemental strand, 31043952 - 31043462
Alignment:
Q  625 tcaaataattttttcagtcagacaattgattcctctgtctttttgtcttgcccgtgttgggagaaaacctcggcacatccgctaaatcaagttttccacc 724  Q
    |||||||||||| |||||| |||||||||||||||   |||| |||||||| | |||||||||||||||| ||||||||||| |||||||||||||||||    
T  31043952 tcaaataattttgtcagtcggacaattgattcctcaacctttctgtcttgcacttgttgggagaaaaccttggcacatccgccaaatcaagttttccacc 31043853  T
Q  725 ttgcgaagcacctttaatttccatatacctgcccaatgacctggcctatgcaaatatgaattatccgcaatttcttccaaacataaaccatatgcacttt 824  Q
    ||| |||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||| ||    
T  31043852 ttgggaagcatctttaatttccatataccttcccagtgacctggcctatacaaatatgaattatccgcaatttcttccaagcatacacgatatgcacatt 31043753  T
Q  825 ttacggtataatgcaccggctttctcctttttccaaatgagcttgtcctctccaccgatggaattaggggcatcatcaaaatactttgggccatatcata 924  Q
    ||||  |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  31043752 ttactatataatgccccggctttctcctttttccaaatgagcttgtcctctcca-cgatggaattaggggtatcatcaaaatactttgggccgtatcata 31043654  T
Q  925 atcaaagcacaattgcaccaagtgatggttccaagggtgttgttcacgagttgaatagccggtaatggttggccttcactcgaaatatgtaagctctacc 1024  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||  ||||||||| |    
T  31043653 atcaaagcacaattgca-caagtgatggttccaagcgtgttgttcacgagctgaatagccggtaatggttggctttcacttgaaata--taagctctatc 31043557  T
Q  1025 tcgcatccatggagcataaaaaattgggatatccaaacccgaagcaatcttccacctcgcacattataaaagtaacgtgcctagataccaaacaa 1119  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| ||||| |||||||||||||||||| ||||    
T  31043556 tcgcatccatggagcataaaaaattgggatatccatacctgaaccaatcttccacctcgcatattttaaaaataacgtgcctagataccagacaa 31043462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 31044078 - 31043986
Alignment:
Q  146 aagaagatgaaggtgaaaagctgaagcttacattaatccccttcctccaaatgatccaaatcagattgaatttattttgatgcaaggataagt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31044078 aagaagatgaaggtgaaaagctgaagcttacattaatccccttcctccaaatgatccaaatcagattgaatttattttgatgcaagaataagt 31043986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 929 - 1116
Target Start/End: Complemental strand, 31108926 - 31108752
Alignment:
Q  929 aagcacaattgcaccaagtgatggttccaagggtgttgttcacgagttgaatagccggtaatggttggc---cttcactcgaaatatgtaagctctacct 1025  Q
    |||||||||||||| | |||||| |||||||  | ||||||| ||| |||||||||||||||| |||||   ||||||||||||||   ||||||||  |    
T  31108926 aagcacaattgcacga-gtgatgcttccaagtttcttgttcatgagctgaatagccggtaatgattggcgcccttcactcgaaatag--aagctctatat 31108830  T
Q  1026 cgcatccatggagcataaaaaattgggatatccaaacccgaagcaatcttccacctcgcacattataaaagtaacgtgcctagataccaaa 1116  Q
    ||||||||||||||||||||| |||||||||             |||||||||||||||||||| |||||||||| |||||||||||||||    
T  31108829 cgcatccatggagcataaaaatttgggatat-------------aatcttccacctcgcacattttaaaagtaacttgcctagataccaaa 31108752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 8319846 - 8319805
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8319846 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 8319805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 8315307 - 8315267
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8315307 gcttctgaacaagcttccgcttctgattttctgcgctatca 8315267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 17096177 - 17096130
Alignment:
Q  68 ttctctctctaattcacaaaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  17096177 ttctctctctaattcacaaaaccttagaataagaaactgcttctgaac 17096130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 27574681 - 27574597
Alignment:
Q  37 agaatcaattacaatttcatcataatttttct----------tctctctctaattcacaaaaccttagaatcagaaacggcttct 111  Q
    ||||||||||||||||||| ||||||||||||          ||||||| |||||||||||||||||||||||||||| ||||||    
T  27574681 agaatcaattacaatttcaccataatttttctctctctcaattctctctataattcacaaaaccttagaatcagaaactgcttct 27574597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 27535374 - 27535334
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  27535374 gcttctgaacaagcttccgcttctggttttctgcgctatca 27535334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27552100 - 27552014
Alignment:
Q  1 gtatataagctacctcctttgtatattttt-gtatgg----------agaatcaattacaatttcatcataatttttcttctctctc 76  Q
    ||||||||||||||||||||||| |||||| ||||||          ||||||||||||||||||||||||| ||||||||||||||    
T  27552100 gtatataagctacctcctttgtacatttttcgtatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctc 27552014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 27574547 - 27574506
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  27574547 gcttctgaacaagcttccgcttttggttttctgcgctatcaa 27574506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 8315406 - 8315358
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  8315406 ttctctctctaattcacataaaccttagaataagaaactgcttctgaac 8315358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 8319945 - 8319897
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  8319945 ttctctctctaattcacataaaccttagaataagaaactgcttctgaac 8319897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 17096115 - 17096075
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  17096115 gcttatgaacaagcttctgcttctgattttctgcgctatca 17096075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 31056363 - 31056298
Alignment:
Q  237 gtacctcttatctttaagatggtttgtgtgatattatgagctacaacata-tagtatcaattctaaag 303  Q
    |||| ||| ||||||||||||||  ||||||||||||||||||||| ||| ||||||| |||||||||    
T  31056363 gtacgtctcatctttaagatggt--gtgtgatattatgagctacaatatactagtatctattctaaag 31056298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 17780128 - 17780166
Alignment:
Q  37 agaatcaattacaatttcatcataatttttcttctctct 75  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  17780128 agaatcaattacaatttcatcataacttttattctctct 17780166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 735 - 957
Target Start/End: Complemental strand, 13696772 - 13696550
Alignment:
Q  735 cctttaatttccatatacctgcccaatgacctggcctatgcaaatatgaattatccgcaatttcttccaaacataaaccatatgcactttttacggtata 834  Q
    |||||||||||| |||| ||||||| ||||| |||  |||||||||||||| ||||  ||||| |||||||||||||   |||||| |||| || |||||    
T  13696772 cctttaatttccttataactgcccactgaccaggctgatgcaaatatgaatcatccagaatttattccaaacataaatggtatgcatttttaaccgtata 13696673  T
Q  835 atgcaccggctttctcctttttccaaatgagcttgtcctct-ccaccgatggaattaggggcatcatcaaaatactttgggccatatcataatcaaagca 933  Q
     |||  |  |||| ||||||||||||||||||||||||||| ||| |||||| || |||| | |  |||||||||| ||  || || |||||| |||  |    
T  13696672 gtgc-tcaactttttcctttttccaaatgagcttgtcctctaccatcgatgggataagggtcgtattcaaaatactctgacccgtagcataataaaaaaa 13696574  T
Q  934 caattgcaccaagtgatggttcca 957  Q
    |  |||| ||||||||||||||||    
T  13696573 ctcttgcgccaagtgatggttcca 13696550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 16588468 - 16588336
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaat----------caattacaatttcatcataatttttc-----------ttctctctctaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||| |||||           ||||||||||||    
T  16588468 gtatataagctacctcctttgtatatttttgtatggagaatcaataagaatcaattacaatttcatcataacttttcttctctctcaattctctctctaa 16588369  T
Q  80 ttcacaaaaccttagaatcagaaacggcttctg 112  Q
    ||||||||||||||||||||||||| |||||||    
T  16588368 ttcacaaaaccttagaatcagaaactgcttctg 16588336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 26316216 - 26316291
Alignment:
Q  40 atcaattacaatttcatcataatttttcttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||| | |||| ||||||||||    
T  26316216 atcaattacaatttcatcataa-ctttcttctctctctaattcacataaaccttagaattaaaaactgcttctgaac 26316291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 39794210 - 39794251
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39794210 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 39794251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 39796814 - 39796854
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39796814 gcttctgaacaagcttccgcttctgattttctgcgctatca 39796854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 26311763 - 26311818
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaacaagcttc 122  Q
    |||||||||||||||||| |||||||||||||| || | |||||||||| ||||||    
T  26311763 ttctctctctaattcacataaaccttagaatcaaaatctgcttctgaactagcttc 26311818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 28644729 - 28644863
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat----------tacaatttcatcataatttt--------tc--ttctctctctaat 80  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||          ||||||||||||||||||||        ||  |||||||||||||    
T  28644729 gtatataagctacctcctttgtatatttttgcatgtagaatcaataagaatcaattacaatttcatcataattttcttctctctcaattctctctctaat 28644828  T
Q  81 tcacaaaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||||||||| ||||||||||    
T  28644829 tcacaaaaccttagaatcagaaactgcttctgaac 28644863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 30410232 - 30410177
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaacaagcttc 122  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||    
T  30410232 ttctctctctaattcacataaaccttagaatcagaaactgcttctgaactagcttc 30410177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 30410145 - 30410104
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  30410145 gcttctgaactagcttccgcttctgattttctgcgctatcaa 30410104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 30405723 - 30405675
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  30405723 ttctctctctaattcacataaaccttagaatcagaaactgcttctgaac 30405675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 202027 - 201985
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  202027 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 201985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 316864 - 316822
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  316864 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 316822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 43811826 - 43811784
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  43811826 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 43811784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 197509 - 197468
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  197509 gcttctgaacaaagcttccgcttctgattttctgcgctatca 197468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 312346 - 312305
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  312346 gcttctgaacaaagcttccgcttctgattttctgcgctatca 312305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 30405625 - 30405585
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  30405625 gcttctgaactagcttctgcttctgattttctgcgctatca 30405585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30405810 - 30405766
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||    
T  30405810 gtatataagctacctcctttgtacatttttatatgtagaatcaat 30405766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30410319 - 30410275
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||    
T  30410319 gtatataagctacctcctttgtacatttttatatgtagaatcaat 30410275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 38757243 - 38757291
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||| |||||||||||| |||||| ||||||||||    
T  38757243 ttctctctctaattcacataaaccttagaataagaaactgcttctgaac 38757291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 43807253 - 43807213
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatc 145  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  43807253 gcttctgaacaaagcttccgcttctgattttctgcgctatc 43807213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 38757354 - 38757396
Alignment:
Q  106 gcttctgaacaagcttccgcttct-gattttctgcgctatcaa 147  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  38757354 gcttctgaacaagcttccgcttctggtttttctgcgctatcaa 38757396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 27761727 - 27761770
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaaga 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27761727 gcttctgaacaagcttccgcttctgattttctgcgctatcaaga 27761770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 27757212 - 27757253
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27757212 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 27757253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 47419568 - 47419426
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat----------tacaatttcatcataatttttcttctctctc-----------taa 79  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||          |||||||||||||||||||| ||||||||||           |||    
T  47419568 gtatataagctacctcctttgtatattttcgtatgtagaatcaataaaaatcaattacaatttcatcataattttacttctctctcaattctctctctaa 47419469  T
Q  80 ttcaca-aaaccttagaatcagaaacggcttctgaacaagctt 121  Q
    |||||| ||||||||||||||||||| |||||||||| |||||    
T  47419468 ttcacataaaccttagaatcagaaactgcttctgaacgagctt 47419426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 22901533 - 22901573
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22901533 gcttctgaacaagcttccgcttctgattttctgcgctatca 22901573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 47419416 - 47419376
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47419416 gcttctgaacaagcttccgcttctgattttctgcgctatca 47419376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 7939986 - 7939937
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  7939986 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 7939937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 7944426 - 7944384
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7944426 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 7944384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 7944539 - 7944490
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  7944539 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 7944490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 22901410 - 22901459
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  22901410 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 22901459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 27757101 - 27757150
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  27757101 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 27757150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 7939849 - 7939808
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  7939849 gcttctgaacaaagcttccgcttctgattttctgcgctatca 7939808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22901323 - 22901366
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||    
T  22901323 gtatataagctacctcctttgtata-ttttgtatgtagaatcaat 22901366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27757013 - 27757057
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||    
T  27757013 gtatataagctacctcctttgtacatttttatatgtagaatcaat 27757057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27761564 - 27761608
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||    
T  27761564 gtatataagctacctcctttgtacatttttatatgtagaatcaat 27761608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 27761652 - 27761701
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  27761652 ttctctctctaattcacataaaaccttagaattagaaactgcttctgaac 27761701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 6463428 - 6463295
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat----------tacaatttcatcataatttttcttctctc---------tctaatt 81  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||||          |||||||||||||||| ||||||||||||         |||||||    
T  6463428 gtatataagctacctcctttgtacattttagtatgtagaatcaataaagatcaattacaatttcatcataacttttcttctctcaattctctctctaatt 6463329  T
Q  82 cacaaaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||| |||||| ||||||||||    
T  6463328 cacaaaaccttagaataagaaactgcttctgaac 6463295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 8055722 - 8055762
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8055722 gcttctgaacaagcttccgcttctgattttctgcgctatca 8055762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 6463267 - 6463227
Alignment:
Q  107 cttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  6463267 cttctgaacaagcttccgcttctggttttctgcgctatcaa 6463227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 8055646 - 8055696
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaaca 116  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  8055646 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaaca 8055696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 36670758 - 36670808
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaaca 116  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  36670758 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaaca 36670808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 36675306 - 36675356
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaaca 116  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  36675306 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaaca 36675356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 8051093 - 8051142
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  8051093 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 8051142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 8051206 - 8051248
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  8051206 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 8051248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 36670865 - 36670907
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  36670865 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 36670907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 36675413 - 36675454
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  36675413 gcttctgaacaaagcttccgcttctgattttctgcgctatca 36675454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 44147374 - 44147415
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44147374 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 44147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 44151885 - 44151926
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44151885 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 44151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 53722329 - 53722378
Alignment:
Q  97 tcagaaacggcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    |||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  53722329 tcagaacctgcttctgaacaagcttccgcttctggttttctgcgctatca 53722378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 31670344 - 31670392
Alignment:
Q  68 ttctctctctaattcaca-aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  31670344 ttctctctctaattcacataaaccttagaatcagaaactgcttctgaac 31670392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 3771096 - 3771145
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  3771096 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 3771145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 53722261 - 53722311
Alignment:
Q  68 ttctctctctaattcacaaaaccttagaatcagaaacggcttctgaacaag 118  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||| |||||    
T  53722261 ttctctctctaattcacaaaatcttagaatcagaaattgcttctggacaag 53722311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 3771262 - 3771303
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  3771262 gcttctgaacaaagcttccgcttctgattttctgcgctatca 3771303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 44147277 - 44147323
Alignment:
Q  71 tctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  44147277 tctctctaattcacataaaaccttagaatcagaaactgcttctgaac 44147323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 44151812 - 44151858
Alignment:
Q  71 tctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  44151812 tctctctaattcacataaaaccttagaatcagaaactgcttctgaac 44151858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 40371652 - 40371609
Alignment:
Q  68 ttctctctctaattcacaaaaccttagaatcagaaacggcttct 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  40371652 ttctctctctaattcacaaaaccttagaatcagaaactgcttct 40371609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30695460 - 30695545
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatca----------attacaatttcatcataatttttcttctctctc 76  Q
    ||||||||||||||||||||||| ||||| ||||| |||||||          |||||||||||||||||||||||||||||||||    
T  30695460 gtatataagctacctcctttgtacattttcgtatgtagaatcaataaagatcaattacaatttcatcataatttttcttctctctc 30695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 40371589 - 40371548
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  40371589 gcttctgaacaagcttccgcttctggttttctgcgctatcaa 40371548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 40367426 - 40367386
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatca 146  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  40367426 gcttctgaacaagcttccgcttctggttttctgcgctatca 40367386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 7103717 - 7103675
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7103717 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 7103675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 12018987 - 12019036
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  12018987 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 12019036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 12019103 - 12019145
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  12019103 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 12019145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 12023556 - 12023605
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  12023556 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 12023605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 12023686 - 12023728
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  12023686 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 12023728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 16794483 - 16794525
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  16794483 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 16794525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 30695548 - 30695594
Alignment:
Q  68 ttctctctctaattcacaaaaccttagaatcagaaacggcttctgaa 114  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||    
T  30695548 ttctctctctaattcacaaaaccttagaataagaaactacttctgaa 30695594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 7099148 - 7099107
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  7099148 gcttctgaacaaagcttccgcttctgattttctgcgctatca 7099107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 16799026 - 16799067
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  16799026 gcttctgaacaaagcttccgcttctgattttctgcgctatca 16799067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 37682359 - 37682400
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  37682359 gcttctgaacaaagcttccgcttctgattttctgcgctatca 37682400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 40367555 - 40367478
Alignment:
Q  37 agaatcaattacaatttcatcataatttt--------tc--ttctctctctaattcacaaaaccttagaatcagaaac 104  Q
    |||||||||||||||||||||||||||||        ||  |||||||| ||||||||||||||||||||||||||||    
T  40367555 agaatcaattacaatttcatcataattttcttctctctcaattctctctataattcacaaaaccttagaatcagaaac 40367478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 7099277 - 7099228
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  7099277 ttctctctcttattcacataaaaccttagaatcagaaactgcttctgaac 7099228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 7103846 - 7103797
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  7103846 ttctctctcttattcacataaaaccttagaatcagaaactgcttctgaac 7103797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 16794363 - 16794412
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  16794363 ttctctctcttattcacataaaaccttagaatcagaaactgcttctgaac 16794412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 16798924 - 16798973
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  16798924 ttctctctcttattcacataaaaccttagaatcagaaactgcttctgaac 16798973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19502476 - 19502533
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaattacaatttcatcataa 61  Q
    |||||||||||||||||||| ||||||||  ||   ||||||||| |||||||||||||||    
T  19502476 gtatataagctacctcctttatatattttcata---agaatcaataacaatttcatcataa 19502533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 30695610 - 30695652
Alignment:
Q  106 gcttctgaacaagcttccgcttct-gattttctgcgctatcaa 147  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  30695610 gcttctgaacaagcttccgcttctggtttttctgcgctatcaa 30695652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 37659041 - 37659083
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||| ||||||||||||||||||||||||    
T  37659041 gcttctgaacaaagcttctgcttctgattttctgcgctatcaa 37659083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 6457 - 6539
Alignment:
Q  223 tgatgcaaggataagtacctcttatctttaagatggtttgtgtgatattatgagctacaacatatagtatcaattctaaagca 305  Q
    ||||||||| ||  |||| ||||||||||||||| ||||||||||| |||||||||| |  |||||||| |||||||| ||||    
T  6457 tgatgcaagcattggtacttcttatctttaagatagtttgtgtgatcttatgagctatagtatatagtaccaattctatagca 6539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 7862 - 7903
Alignment:
Q  106 gcttctgaacaagcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7862 gcttctgaacaagcttccgcttctaattttctgcgctatcaa 7903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 7763 - 7811
Alignment:
Q  69 tctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  7763 tctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 7811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 44768 - 44719
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  44768 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 44719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 49208 - 49166
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  49208 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 49166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 44628 - 44587
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatca 146  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  44628 gcttctgaacaaagcttccgcttctgattttctgcgctatca 44587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 49348 - 49299
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| |||| |||||    
T  49348 ttctctctctaattcacataaaaccttagaatcagaaactgcttatgaac 49299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 21847365 - 21847414
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  21847365 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 21847414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 21850455 - 21850504
Alignment:
Q  68 ttctctctctaattcaca--aaaccttagaatcagaaacggcttctgaac 115  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  21850455 ttctctctctaattcacataaaaccttagaatcagaaactgcttctgaac 21850504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 54167107 - 54167065
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  54167107 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 54167065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 54171687 - 54171645
Alignment:
Q  106 gcttctgaacaa-gcttccgcttctgattttctgcgctatcaa 147  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  54171687 gcttctgaacaaagcttccgcttctgattttctgcgctatcaa 54171645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21847278 - 21847322
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||    
T  21847278 gtatataagctacctcctttgtacatttttgtatatagaatcaat 21847322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21850368 - 21850412
Alignment:
Q  1 gtatataagctacctcctttgtatatttttgtatggagaatcaat 45  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||    
T  21850368 gtatataagctacctcctttgtacatttttgtatatagaatcaat 21850412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 21847442 - 21847484
Alignment:
Q  106 gcttctgaacaagcttccgcttct-gattttctgcgctatcaa 147  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  21847442 gcttctgaacaagcttccgcttctggtttttctgcgctatcaa 21847484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 21850532 - 21850573
Alignment:
Q  106 gcttctgaacaagcttccgcttct-gattttctgcgctatca 146  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  21850532 gcttctgaacaagcttccgcttctggtttttctgcgctatca 21850573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University