View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_13 (Length: 461)
Name: NF3998_high_13
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 23858863 - 23859302
Alignment:
| Q |
11 |
cacagaccatgggattttgtttcatatatgccaaccagaactcaaaagaacatttcaaaaatttatagactaatattagagagaaattatcaaaacaata |
110 |
Q |
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| T |
23858863 |
cacagaccatgggattttgtttcatatatgccaaccagaactcaaaagaacatttcaaaaatttatagactaatattagagagaaattatcaaaacaata |
23858962 |
T |
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| Q |
111 |
caaaagaactatttagaatttcataccaatcaataggtaaacacaataaatactagcatcaacnnnnnnnnn--gtgacaaaaatagtagcatcaactta |
208 |
Q |
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| T |
23858963 |
caaaagaactatttagaatttcataccaatcaataggtaaacacaataaatactagcatcaactttttttttttgtgacaaaaatagtagcatcaactta |
23859062 |
T |
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| Q |
209 |
cacagtagctttatatcaatcttacaacaatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccat |
308 |
Q |
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| T |
23859063 |
cacagtagctttatatcaatcttacaacaatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccat |
23859162 |
T |
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| Q |
309 |
gcttccttatcatgccttaaatcatgtgtagacacccataaagaaacacaatgaatcaaatgta--tttacat-aacaaataatcaatgaaattgagcat |
405 |
Q |
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| T |
23859163 |
gcttccttatcatgccttaaatcatgtgtagacacccataaagaaacacaatgaatcaaatgtatttttacataaacaaataatcaatgaaattgagcat |
23859262 |
T |
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| Q |
406 |
ttttagatttgaacttgtgaaccgaaaaggcaattgaaag |
445 |
Q |
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| T |
23859263 |
ttttagatttgaacttgtgaaccgaaaaggcaattgaaag |
23859302 |
T |
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