View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_15 (Length: 448)
Name: NF3998_high_15
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 42133448 - 42133861
Alignment:
| Q |
18 |
ggttccttttgtaccacttatcattacgcatttaagttaacacataactatggtacgtgacatattttggccttttgcatgtgtttgtgatcctaattgt |
117 |
Q |
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| T |
42133448 |
ggttccttttgtaccacttatcattacgcatttaagttaacacataactatggtacgtgacatattttggccttttgcatgtgtttgtgatcctaattgt |
42133547 |
T |
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| Q |
118 |
tgctagctaggtagcttatcctcaaagccagaaaagagttgagtagaaaaagacttatcaagctatgttgttaggcccgcaatgagaagcaccaaagcta |
217 |
Q |
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| T |
42133548 |
tgctagctaggtagcttatcctcaaagccagaaaagagttgagtagaaaaagacttatcaagcta---tgttaggcccgcaatgagaagcaccaaagcta |
42133644 |
T |
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| Q |
218 |
tgtttgctttggctataattgcttagccttttatgaatgatttcattattatatatccttcccatccacttcaattaattaagagtggtccttcccttcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42133645 |
tgtttgctttggctataattgcttagccttttatgaatgatttcattat----tatccttcccatccacttcaattaattaagagtggtccttcccttcc |
42133740 |
T |
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| Q |
318 |
tcctaaatttcctagaatcctagtccttttcgtttggatccaagatctcttcttttttcctcaataggtggtacttgttgtagcttcnnnnnnnngttag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42133741 |
tcctaaatttcctagaatcctagtccttttcgtttggatccaagatctcttcttttttcctcaataggtggtacttgttgtagcttcttttttttgttag |
42133840 |
T |
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| Q |
418 |
ctatagttcaactcccctatg |
438 |
Q |
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| T |
42133841 |
ctatagttcaactcccctatg |
42133861 |
T |
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