View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_17 (Length: 428)
Name: NF3998_high_17
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 2580568 - 2580312
Alignment:
| Q |
1 |
tttcggattcagcattaatcacaaaaatgaataactactcaaaatgttcatttgatgactgataatcctaaaatttaagttaatacaatactggtatgat |
100 |
Q |
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| T |
2580568 |
tttcggattcagcattaatcacaaaaatgaacaactactcagaatgttcatttgatgactcataatcctaaaatttaagttaatacaatactggtatcat |
2580469 |
T |
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| Q |
101 |
acataaaattattttggatacattgattttnnnnnnnnnnnnnggttaaagcttttaaccgtgtgtgttgcaaatgatagatcataggtactgtgatatg |
200 |
Q |
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| T |
2580468 |
acataaaattattttggatacattgattttaaaaaatgaaaaaggttaaagcttttcaccgtgtgtgttgcaaatgatagatcataggtactgtgatatg |
2580369 |
T |
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| Q |
201 |
aatatgtcaattagaaacatattatttgagaaatgtagccccatcattagatttgag |
257 |
Q |
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| T |
2580368 |
aatatgtcaattagaaacatattatttgagaaatgtacccccatcattagatttgag |
2580312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 2580311 - 2580242
Alignment:
| Q |
295 |
aaatgaagagcctattagagtgttcacttgatgactaataatcctaaaactatacttaatactatactgg |
364 |
Q |
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| T |
2580311 |
aaatgaagagcctattagagtgttcacttgatgactaataatcctaaaactatacttaatactatactgg |
2580242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 2580524 - 2580464
Alignment:
| Q |
315 |
tgttcacttgatgactaataatcctaaaactatacttaatactatactggtatgatacata |
375 |
Q |
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| T |
2580524 |
tgttcatttgatgactcataatcctaaaatttaagttaatacaatactggtatcatacata |
2580464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 11378849 - 11379034
Alignment:
| Q |
221 |
attatttgagaaatgtagccccatcattagatttgagcttcaacaatgaatatagtcacttcaattaacaacaaaaatgaagagcctattagagtgttca |
320 |
Q |
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||||||| ||| ||||| ||||||||| ||||||||| |||||||||||||||| |||||| ||||| ||||||||||||||| ||||| ||||| |||| |
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| T |
11378849 |
attatttaagagatgta-ccccatcatcagatttgagtttcaacaatgaatataatcactttaattagcaacaaaaatgaagaacctatcagagttttca |
11378947 |
T |
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| Q |
321 |
cttgatgactaataatcctaaaactatacttaatactatactggtatgatacatattactcaaaatgataatggattaatggtgataca |
409 |
Q |
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| T |
11378948 |
c-tgatgactaataat-ctaacactaaacttaatacaatactggtatgatacatgttatttaaaatgataatggattaatggtgataca |
11379034 |
T |
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