View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_21 (Length: 392)
Name: NF3998_high_21
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 10127123 - 10126780
Alignment:
| Q |
18 |
agtgtcaacactcaacacctgtgaaaacactgacatataatagataccaattgtgattaaatgtaaaactattgtacctgattgaaaaagggagttcggt |
117 |
Q |
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| T |
10127123 |
agtgtcaacactcaacacctgtgaaaacactgacatataatagataccaattgtgattaaatgtaaaactattgtacctgattgaaaaagggagttcgat |
10127024 |
T |
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| Q |
118 |
aggttagtgctctgtgtgatgattcatcgtctgatgaatcagagctgcttccttcgtcatcagaatcaacagcgagtttcttcttcagtgtttctccttt |
217 |
Q |
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| T |
10127023 |
aggttagtgctctgtgtgatgattcatcgtctgatgaatcagagctgcttccttcgtcatcagaatcaacagcgagtttcttcttcagtgtttctccttt |
10126924 |
T |
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| Q |
218 |
tgcattcttttcctgaaagaagcacatcgccttatatcagttaatagaggaaaaataagtttcttatcactgttactatatgataacttgcttattcctt |
317 |
Q |
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| T |
10126923 |
tgcattcttttcctgaaagaagcacatcgccttatatcagttaatagaggaaaaataagtttcttatca---------------------cttattcctt |
10126845 |
T |
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| Q |
318 |
gtgtgttatcaatnnnnnnngcaagtgtaaataaattattttaaatttttaaatatagagaattat |
383 |
Q |
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| T |
10126844 |
gtgtgttatcaat-aaaaaagcaagtgtaaataaattattttaaatttttaaatatagagaattat |
10126780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 72 - 298
Target Start/End: Complemental strand, 10119812 - 10119588
Alignment:
| Q |
72 |
gattaaatgtaaaactattgtacctgattgaaaaagggagttcggtaggttagtgctctgtgtgatgattcatcgtctgatgaatcagagctgcttcctt |
171 |
Q |
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| T |
10119812 |
gattaaatgtaaaactattgtacctgattgaaagagggagtttgataggttcgtgctctatgggat---tcattgtctgaggaaagagctgtgcttcctt |
10119716 |
T |
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| Q |
172 |
cgtcatcagaatcaacagcgagtttcttcttcagtgtttctccttttgcattcttttcctgaaagaagcacatcgccttatatcagttaataga-ggaaa |
270 |
Q |
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| T |
10119715 |
cgtcatcagaatcatcagcgagtttcttctttggtgtttctccttttgaattcttttcctgaagtaagcacgtcactttatatcatttactagacgcaaa |
10119616 |
T |
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| Q |
271 |
aataagtttcttatcactgttactatat |
298 |
Q |
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| T |
10119615 |
aataaatgtctcatcattgtgactatat |
10119588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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