View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_22 (Length: 388)
Name: NF3998_high_22
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 12751450 - 12751826
Alignment:
| Q |
2 |
aagaaggaactgggaaaggcatttgtttaagtcatattatatccttttatagatcattttcattgctcagaaagaaatgcatacaaagtgctcgacatga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12751450 |
aagaaggaactgggaaaggcatttgtttaagtcatattatatccttttatagatcattttcattgctcagaaagaaatgcatacgaagtgctcgacatga |
12751549 |
T |
|
| Q |
102 |
tcaagagttgcttagtaattg--atgtcttaaatgttgcattaaataaagaaagattatttagttattcttgccctcagatataatcaatgttcaataat |
199 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12751550 |
tcaagagttgcttagtaattgggatgtcttaaatgttgcattaaataaagaaagattatttagttattcttgccctcagatataatcaatgttcaataat |
12751649 |
T |
|
| Q |
200 |
caatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccactgaagggaatctactcatcggtgcaaacagt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
12751650 |
caatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatcaaccgaaggggatctactcatcggtgcaaacagt |
12751749 |
T |
|
| Q |
300 |
ttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagta |
376 |
Q |
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| T |
12751750 |
ttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagta |
12751826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 2 - 376
Target Start/End: Original strand, 12814412 - 12814788
Alignment:
| Q |
2 |
aagaaggaactgggaaaggcatttgtttaagtcatattatatccttttatagatcattttcattgctcagaaagaaatgcatacaaagtgctcgacatga |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12814412 |
aagaaggaactgggaaaggcatttgtttaagtcatattatatccttttatagatcattttcattgctcagaaagaaatgcatacgaagtgctcgacatga |
12814511 |
T |
|
| Q |
102 |
tcaagagttgcttagtaattg--atgtcttaaatgttgcattaaataaagaaagattatttagttattcttgccctcagatataatcaatgttcaataat |
199 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12814512 |
tcaagagttgcttagtaattgggatgtcttaaatgttgcattaaataaagaaagattatttagttattcttgccctcggatataatcaatgttcaataat |
12814611 |
T |
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| Q |
200 |
caatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccactgaagggaatctactcatcggtgcaaacagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12814612 |
caatcttgacaaatatcgtaatgacaggccaattagttacattaactaaactcaagcaccaaaatccaccgaagggaatctactcatcggtgcaaacagt |
12814711 |
T |
|
| Q |
300 |
ttgacatcgtaatctactcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagta |
376 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12814712 |
ttgacatcgtaatctcctcatgtattaaacaaacaacaaatattgggaagatggggatatgccttaaatcactagta |
12814788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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