View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3998_high_28 (Length: 346)

Name: NF3998_high_28
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3998_high_28
NF3998_high_28
[»] chr4 (1 HSPs)
chr4 (122-160)||(54111668-54111706)
[»] chr2 (2 HSPs)
chr2 (263-297)||(26435877-26435911)
chr2 (206-234)||(19239837-19239865)
[»] chr7 (1 HSPs)
chr7 (260-297)||(18740852-18740889)
[»] chr6 (1 HSPs)
chr6 (260-297)||(4442017-4442054)
[»] chr5 (1 HSPs)
chr5 (8-41)||(38722184-38722217)
[»] chr3 (1 HSPs)
chr3 (194-234)||(12919508-12919548)


Alignment Details
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 54111706 - 54111668
Alignment:
Q  122 ctcactcggctgctctaacatcgcatatccttcactcgg 160  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  54111706 ctcactcggctgctctagcatcgcttatccttcactcgg 54111668  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 297
Target Start/End: Complemental strand, 26435911 - 26435877
Alignment:
Q  263 ttgttcgtgaactttaaacaagtcgaacttgagtt 297  Q
    ||||||||||||||||||||||||||||| |||||    
T  26435911 ttgttcgtgaactttaaacaagtcgaactcgagtt 26435877  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 19239865 - 19239837
Alignment:
Q  206 ttcgactaacaaaataattatttttaggt 234  Q
    |||||||||||||||||||||||||||||    
T  19239865 ttcgactaacaaaataattatttttaggt 19239837  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 18740852 - 18740889
Alignment:
Q  260 gagttgttcgtgaactttaaacaagtcgaacttgagtt 297  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  18740852 gagttgttcgtgaactttaaacgagtcgaactcgagtt 18740889  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 4442017 - 4442054
Alignment:
Q  260 gagttgttcgtgaactttaaacaagtcgaacttgagtt 297  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  4442017 gagttgttcgtgcactttaaacgagtcgaacttgagtt 4442054  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 38722217 - 38722184
Alignment:
Q  8 gagcagagatcgtggataatgcgtcattgtccat 41  Q
    ||||||||||||||||||||| ||||||||||||    
T  38722217 gagcagagatcgtggataatgggtcattgtccat 38722184  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 12919508 - 12919548
Alignment:
Q  194 ctatttgctgaattcgactaacaaaataattatttttaggt 234  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  12919508 ctatttgccgaattcggctaacaagataattatttttaggt 12919548  T

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