View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_high_34 (Length: 315)
Name: NF3998_high_34
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 6073286 - 6073475
Alignment:
| Q |
17 |
atattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073286 |
atattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcacttgggattaggtttttatttgaactacggtctaacacatttat |
6073385 |
T |
|
| Q |
117 |
aaataccgctgacacatttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccg |
206 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6073386 |
aaataccgttgacacacttcacgaccaaataagacggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccg |
6073475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 6080354 - 6080531
Alignment:
| Q |
32 |
ttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttacaaataccgctgacac |
131 |
Q |
| |
|
||||||| ||||||||| |||| ||| | ||||||||||||||||||||| || || || ||| ||||||||||| |||||| ||| |||| || |
|
|
| T |
6080354 |
ttttgtgcactctcttgactctttcactaaatacaaaatcaattgggattaagtcttacttgcaaccctggtctaacacacttacaattacttctgagac |
6080453 |
T |
|
| Q |
132 |
atttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccgctt |
209 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||| ||||||| |||||| |||||| ||||| |||| |||||| |
|
|
| T |
6080454 |
acttcacgaccaaataggatggacacatattttttggacaatcagaatctctaaaacatcttctattaccacccgctt |
6080531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 6068986 - 6068806
Alignment:
| Q |
30 |
acttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggattaggtttttatttgaactacggtctaacacatttacaaataccgctgac |
129 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | ||||||||||| ||||||||| ||| | || |||| ||||||| |||| |||||| | | || |
|
|
| T |
6068986 |
acttttgtttactctcttggttctttcactaaatacaaaatcatttgggattaagttctacttgcaactccggtctaccacacctacaaagtcttccgat |
6068887 |
T |
|
| Q |
130 |
acatttcacgaccaaataagatggacacatattttttgcacaatcatcatctctgaaacattttctacgaccaaccgcttc |
210 |
Q |
| |
|
||| |||||| ||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||| |||| ||||||| |
|
|
| T |
6068886 |
acacttcacggccaaataagatgggcacataaattttggacaatcagaatctctaaaacattttctattaccacccgcttc |
6068806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 6113348 - 6113281
Alignment:
| Q |
14 |
gtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
82 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
6113348 |
gtaatattctaaaag-acttttgtgtattctcttggttctttcactaaatacaaaatcacttgggatta |
6113281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 6120242 - 6120173
Alignment:
| Q |
12 |
atgtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
82 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||| || | ||||||||||| ||||||||| |
|
|
| T |
6120242 |
atgtaatattctaaaag-acttttgtgtactctcctggttctttcagtaaatacaaaatcacttgggatta |
6120173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 6091406 - 6091475
Alignment:
| Q |
12 |
atgtaatattcttaaaggacttttgtgtactctcttggttcttgcacaacatacaaaatcaattgggatta |
82 |
Q |
| |
|
|||||||||||| |||| |||||||||| || ||||||||||| ||| | ||||||||||| | ||||||| |
|
|
| T |
6091406 |
atgtaatattctaaaag-acttttgtgtcctgtcttggttctttcactaaatacaaaatcactagggatta |
6091475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University