View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_35 (Length: 301)
Name: NF3998_high_35
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 38864696 - 38864979
Alignment:
| Q |
12 |
atgaactttcttgctcaaacacaactcaagacattaagagagggcatttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtg |
111 |
Q |
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| T |
38864696 |
atgaactttcttgctcaaccacaactcaagacattaagagagggtatttaattagtttatatttctctatagttacgttccaaagcttcatgctcaagtg |
38864795 |
T |
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| Q |
112 |
gttggatccctataacggtttctagtactggcacaacaattggttgttgtgaccgaacaatctttctacaagtatcaagaagacattgtctacactttgg |
211 |
Q |
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| T |
38864796 |
gttggatccttataacggtttctagtactggcataacaattggttgttgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttgg |
38864895 |
T |
|
| Q |
212 |
acatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttc |
295 |
Q |
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| T |
38864896 |
acatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttc |
38864979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 68 - 295
Target Start/End: Original strand, 38840682 - 38840912
Alignment:
| Q |
68 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccctataacggtttctagtactggcacaacaattggttgt---tgtgac |
164 |
Q |
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| T |
38840682 |
ttatatttccctatagttacgttccaaagcttcgtgctctagtggttcgatccttataataatttctggcactggcaacacaattggttgcacctgcgac |
38840781 |
T |
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| Q |
165 |
cgaacaatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
264 |
Q |
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| T |
38840782 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38840881 |
T |
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| Q |
265 |
ggttgcatttaggcaaaatgcgcaccttttc |
295 |
Q |
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| T |
38840882 |
ggttgcatttaggcaaaatgcgcaccttttc |
38840912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 71 - 288
Target Start/End: Original strand, 38861297 - 38861517
Alignment:
| Q |
71 |
tatttctctatagttacgttccaaagcttcatgctcaagtggttggatccctataacggtttctagtactggcacaacaattggttg---ttgtgaccga |
167 |
Q |
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| T |
38861297 |
tatttctctatagttacgttccaaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttgcacttgcgaccca |
38861396 |
T |
|
| Q |
168 |
acaatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggt |
267 |
Q |
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| T |
38861397 |
ccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggt |
38861496 |
T |
|
| Q |
268 |
tgcatttaggcaaaatgcgca |
288 |
Q |
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| T |
38861497 |
tgcatttaggcaaaatgcgca |
38861517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 68 - 288
Target Start/End: Complemental strand, 38851222 - 38850999
Alignment:
| Q |
68 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccctataacggtttctagtactggcacaacaattggttg---ttgtgac |
164 |
Q |
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||||||||| ||||||||||| |||||||||| | | || ||||||||||| ||||| |||||| | ||||||| ||||||||||| ||| ||| |
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| T |
38851222 |
ttatatttccctatagttacgctccaaagcttgaggttctagtggttggatagttataatagtttctggcactggcaacacaattggttgcacttgcgac |
38851123 |
T |
|
| Q |
165 |
cgaacaatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
264 |
Q |
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| | ||||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
38851122 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38851023 |
T |
|
| Q |
265 |
ggttgcatttaggcaaaatgcgca |
288 |
Q |
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| T |
38851022 |
ggttgcatttaggcaaaatgcgca |
38850999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 38858524 - 38858650
Alignment:
| Q |
169 |
caatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
268 |
Q |
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| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
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| Q |
269 |
gcatttaggcaaaatgcgcaccttttc |
295 |
Q |
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| T |
38858624 |
gcatttaggcaaaatgcgcaccttttc |
38858650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 38826996 - 38827124
Alignment:
| Q |
167 |
aacaatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
266 |
Q |
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||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
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| T |
38826996 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38827095 |
T |
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| Q |
267 |
ttgcatttaggcaaaatgcgcaccttttc |
295 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38827096 |
ttgcatttaggcaaaatgcgcaccttttc |
38827124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 38846604 - 38846732
Alignment:
| Q |
167 |
aacaatctttctacaagtatcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
266 |
Q |
| |
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||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
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| T |
38846604 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38846703 |
T |
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| Q |
267 |
ttgcatttaggcaaaatgcgcaccttttc |
295 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38846704 |
ttgcatttaggcaaaatgcgcaccttttc |
38846732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 43666059 - 43666119
Alignment:
| Q |
229 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcac |
289 |
Q |
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| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcac |
43666119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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