View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_37 (Length: 286)
Name: NF3998_high_37
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_37 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 1249204 - 1248942
Alignment:
| Q |
6 |
aggagcacagagctggttgtggcttacatctaggcctacaagcttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagc |
105 |
Q |
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| T |
1249204 |
aggaccacaaagctggttgtggctcacatctaggcctacaagcttaggaaggcggccgaggtaagccggaacccgaccggttaaatggttgttattaagc |
1249105 |
T |
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| Q |
106 |
cctaaagtggctaaattggtgagcttgctaaagtaatcggggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249104 |
cctaaagtggctaaattggtgagcttgctaaagtaatcagggataggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcg |
1249005 |
T |
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| Q |
206 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggt |
268 |
Q |
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| T |
1249004 |
caatggcttgagggataggaccggtgaggttagggaggttgcggaatatgagggtctccaggt |
1248942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 268
Target Start/End: Original strand, 12096105 - 12096324
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
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| T |
12096105 |
ttaggaaggcggccgaggtaagcaggaattggaccggttaattggttgttattaagccctaaggtggctaaattggtaagtttgctaaagtaatcaggga |
12096204 |
T |
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| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
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| T |
12096205 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttagggaggaggcg |
12096304 |
T |
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| Q |
249 |
gaatatgagggtctccaggt |
268 |
Q |
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| T |
12096305 |
aaaaatgagggtctcgaggt |
12096324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 49 - 268
Target Start/End: Original strand, 12079465 - 12079684
Alignment:
| Q |
49 |
ttaggaaggtggccgaggtaagccggaacctgaccggttaaatggttgttattaagccctaaagtggctaaattggtgagcttgctaaagtaatcgggga |
148 |
Q |
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||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||| |||| |
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| T |
12079465 |
ttaggaaggcggccgaggtaagctggaattggaccggttaattggttgttattaagccctaaggtggctaaattggttagtttgctaaagtaatcaggga |
12079564 |
T |
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| Q |
149 |
taggaccggttaggctgttccagttaaggaggacaaagttaaggtgaggaagtttcgcaatggcttgagggataggaccggtgaggttagggaggttgcg |
248 |
Q |
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| T |
12079565 |
taggaccagttaggttgttccaattaaggaggacaaatttaaggtgaggcagtcttgcaatggcttgaggaataggacctgttaggttaggtaggaggcg |
12079664 |
T |
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| Q |
249 |
gaatatgagggtctccaggt |
268 |
Q |
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|| ||||||||||| |||| |
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| T |
12079665 |
taaaatgagggtctcgaggt |
12079684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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