View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_42 (Length: 253)
Name: NF3998_high_42
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4264013 - 4264242
Alignment:
| Q |
1 |
tgaacctggacaaaagagaagtttccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcgtcacttgtgtatataa |
100 |
Q |
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| T |
4264013 |
tgaacctggacaaaagagaagtttccaatacgaataacccttccattagcaactgccatggagtttgcaaatgggagagactcatcacttgtgtatataa |
4264112 |
T |
|
| Q |
101 |
ccccattttttataatgaaatcagctactaatggaagagtagactgtggaagcttcttccatgaaggaaaatctgcaaaacccagaaatggtttatgaat |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
4264113 |
ccccattttttataatgaaatcagatactaatggaagagtagactgtggaagcttcttccataaaggaaaatctgcaaaacccagaaatggcttatgaat |
4264212 |
T |
|
| Q |
201 |
tcattcatttgtgcatgcaaaagtgtacac |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4264213 |
tcattcatttgtgcatgcaaaagtgtacac |
4264242 |
T |
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