View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3998_high_43 (Length: 253)
Name: NF3998_high_43
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_43 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 608550 - 608792
Alignment:
| Q |
11 |
cacagaacctaaatgatccacagtatttataagagctttgacggcataatccttcaatgtttcaaccaatctgcatataaaatacaataagagatcatga |
110 |
Q |
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| T |
608550 |
cacagaacctaaatgatccacagtatttataagagctttgacggcataatccttcaatgtttcaaccaatctgcaaataaaatacaataagagatcatga |
608649 |
T |
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| Q |
111 |
aaaataaagaagagtacaaaggatactatagtattagcaaattaactcacatttgtttttggtcatcattggtgtatgagagttcaaaatattcagctgc |
210 |
Q |
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| T |
608650 |
aaaataaagaagagtacaaaggatactatagtattagcaaattaactcacatttgtttttggtcatcattggtgtatgagagttcaaaatattcagctgc |
608749 |
T |
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| Q |
211 |
tgagtacaattgtgttctaagattttttaaatcctagaaatgt |
253 |
Q |
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| T |
608750 |
tgagtacaattgtgttctaagattttttaaatcctagaaatgt |
608792 |
T |
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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 41770369 - 41770277
Alignment:
| Q |
154 |
aactcacatttgtttttggtcatcattggtgtatgagagttcaaaatattcagctgctgagtacaattgtgttctaagattttttaaatccta |
246 |
Q |
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| T |
41770369 |
aactcacatctgtttctgatcatcgttggtatatgagagttcaaaatattcagctgcagaatacaactgtgttctcagattttttaaatccta |
41770277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 41770531 - 41770469
Alignment:
| Q |
11 |
cacagaacctaaatgatccacagtatttataagagctttgacggcataatccttcaatgtttc |
73 |
Q |
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| T |
41770531 |
cacagaacctaaatggtccactgtatttacaagagctttgatggcataatccttcagtgtttc |
41770469 |
T |
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