View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3998_high_45 (Length: 250)
Name: NF3998_high_45
Description: NF3998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3998_high_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 4264011 - 4263778
Alignment:
| Q |
6 |
ttcatttcatttctctgtttcttctatattaatattgcnnnnnnnnnaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4264011 |
ttcatttcatttctctgtttcttctatattaatattgcttatttttgaatatatatgatttcaatgtgattttgaggttcaatttccacttacccggaag |
4263912 |
T |
|
| Q |
106 |
ttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgactatgatgcacagacactcctagaatcctcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4263911 |
ttatttttcaattgattgattattgagttagttgttactacctttggtaggaattagttagtagttgactatgatgcacggacactcctagaatcctcag |
4263812 |
T |
|
| Q |
206 |
attaggcgtgtcctgttgtcaggcacgtgatgat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
4263811 |
attaggcgtgtcctgttgtcaggcacgttatgat |
4263778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University